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Martin Larralde / PyFAMSA
GNU General Public License v3.0 onlyCython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
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Martin Larralde / PyJess
MIT LicenseCython bindings and Python interface to Jess, a 3D template matching software.
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Martin Larralde / Pyrodigal
GNU General Public License v3.0 onlyCython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.
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Martin Larralde / PySWRD
GNU General Public License v3.0 onlyCython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.
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Martin Larralde / PyOpal
MIT LicenseCython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
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Martin Larralde / PyFastANI
MIT LicenseCython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
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extractor / sais-lite-lcp
MIT LicenseForked from https://github.com/kurpicz/sais-lite-lcp.git
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Mirrors / SuperElastix
Apache License 2.0Updated -
Hoogenboom / fdstools
BSD 3-Clause "New" or "Revised" LicenseData analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.
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This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.
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extractor / gesa
MIT LicenseLibrary implementing Generalized Enhanched Suffix Arrays (GESAs)
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Hoogenboom / tssv
MIT LicenseUpdated -
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