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Cython bindings and Python interface to Jess, a 3D template matching software.

Cython bindings and Python interface to HMMER3.

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

Cython bindings and Python interface to CoMSA, a compressor for multiple-sequence alignments.

Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.

Forked from https://github.com/kurpicz/sais-lite-lcp.git

Mirror of https://github.com/SuperElastix/SuperElastix.git

Data analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.

This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.

Library implementing Generalized Enhanched Suffix Arrays (GESAs)

Mirror of https://github.com/biopet/gatk.git

Program that solves sensitivity/specificity tables.