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Sam Nooij / Create MAGs from filtered reads-Kraken
BSD 3-Clause "New" or "Revised" LicenseUse Kraken2 to quickly classify metagenomic reads and extract reads of taxa of interest to then assemble metagenomic assembled genomes (MAGs)
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Scripts used for differential gene expression analysis and its reporting (currently for RNA-seq data)
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Generate and Annotate DNAse-seq footprint with Transcription factor binding sites.
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Laros / fastools
MIT LicenseUpdated -
Sam Nooij / FECBUD functional analysis-HUMAnN
BSD 3-Clause "New" or "Revised" LicenseFunctional metagenomics analysis using the HUMAnN tool version 3
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Extracting transcript mappings from genbank files
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courses / Git course
Creative Commons Attribution 4.0 InternationalWebsite and materials for our Git courses
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van Helden / gitcourse
Creative Commons Attribution 4.0 InternationalUpdated -