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van Helden / gitcourse
Creative Commons Attribution 4.0 InternationalUpdated -
Fork of part 3 analysis of the script
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Sam Nooij / FECBUD functional analysis-HUMAnN
BSD 3-Clause "New" or "Revised" LicenseFunctional metagenomics analysis using the HUMAnN tool version 3
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Sam Nooij / rCDI resistome and MDRO analyses
BSD 3-Clause "New" or "Revised" LicenseAnalyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms
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Sam Nooij / FECBUD microbiota analyses
BSD 3-Clause "New" or "Revised" LicenseMicrobiota analyses of metagenomic samples of ulcerative colitis patients and fecal microbiota transplantation donors in the FECBUD trial
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Mutalyzer / mutalyzer2
Creative Commons Attribution Share Alike 4.0 InternationalHGVS variant nomenclature checker
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Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.
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This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.
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Sam Nooij / pks in rCDI metagenomes analysis
BSD 2-Clause "Simplified" LicenseAnalysis scripts used to analyse the procarcinogenic pks gene island in metagenomes of multiple recurrent Clostridioides difficile infected patients and their corresponding healthy donors from the Netherlands Donor Feces Bank.
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anatomy / WebGL Viewer
Apache License 2.0Public repository containing the code for the open source WebGL viewer based on BabylonJS
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