Explore projects

This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.

Website and materials for our Git courses

Comparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.

Flask web application for PONGS project.

Analyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms

Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.

Mirror of https://github.com/LUMC/mutalyzer.git

Fork of part 3 analysis of the script

Functional metagenomics analysis using the HUMAnN tool version 3