Explore projects
-
Updated
-
De Coster / APqr Final
GNU General Public License v3.0 or laterUpdated -
-
Fork of part 3 analysis of the script
Updated -
Updated
-
Updated
-
Updated
-
Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses.
Updated -
-
Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses
Updated -
Repository containing the script required to reproduce the figure 5 and supplementary figures related to snRNA-seq in cerebrum E14.5
Updated -
Sam Nooij / R. gnavus MAGs from rCDI patients
BSD 3-Clause "New" or "Revised" LicenseGenerate metagenome-assembled genomes of Ruminococcus gnavus from recurrent Clostridioides difficile infected patient metagenomes
Updated -
Neuroscience / Standardised ASL Pipeline
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalUpdated -
Sam Nooij / Create MAGs from filtered reads-Kraken
BSD 3-Clause "New" or "Revised" LicenseUse Kraken2 to quickly classify metagenomic reads and extract reads of taxa of interest to then assemble metagenomic assembled genomes (MAGs)
Updated -
Sam Nooij / FECBUD functional analysis-HUMAnN
BSD 3-Clause "New" or "Revised" LicenseFunctional metagenomics analysis using the HUMAnN tool version 3
Updated -
Updated