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Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.

Dependency free, Cython-compatible scoring matrices to use with biological sequences.

A NumPy port of the foldseek code for encoding protein structures to 3di.

Physicochemical properties and indices for amino-acid sequences (ported from R).

Flask web application for PONGS project.

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.

Code and tables for translation from variants to haplotypes.

MassyTools, ported to Python 3

A PyTorch implementation of Tree-structured Conditional Random Fields.

Rust coder/decoder for Nucleotide Archival Format (NAF) files.

Gene Clusters with Conditional Random Fields.

This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.