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An automated workflow for taxonomically classifying assembled scaffolds from metagenomics data.

Primer design module

Analyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms

Practica files for the workshop

Library implementing Generalized Enhanched Suffix Arrays (GESAs)

Data analysis skeleton.

Rig framework pipeline -- magpie

Data analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.