Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Git course
Project overview
Project overview
Details
Activity
Releases
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Issues
2
Issues
2
List
Boards
Labels
Service Desk
Milestones
Merge Requests
0
Merge Requests
0
Operations
Operations
Incidents
Analytics
Analytics
Repository
Value Stream
Wiki
Wiki
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Create a new issue
Commits
Issue Boards
Open sidebar
courses
Git course
Commits
e89090b6
Commit
e89090b6
authored
Nov 16, 2015
by
Martijn Vermaat
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
Update README
parent
00bbd6f0
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
27 additions
and
23 deletions
+27
-23
README.md
README.md
+27
-23
No files found.
README.md
View file @
e89090b6
#
Git introduction course
#
Data management with GitLab
The Git introduction course aims at everyone who works in the Bioinformatics
field. We cover a
*version control system*
named
*Git*
. This system is widely
used by software developers, but can also be used for project management. By
keeping track of all versions, history, etc. collaboration with colleagues is
easy and your analysis will be reproducible.
This is the website for the course
*Data management with GitLab*
. This course
consists of a introduction to working with the
[
Git
](
http://git-scm.com/
)
version control system for data analysis and is aimed primarily at researchers
in the LUMC.
You can find the
[
course website on our wiki
](
https://humgenprojects.lumc.nl/trac/humgenprojects/wiki/git
)
. This
repository contains lectures and practicals, written in LaTeX.
The Git system is widely used by software developers, but can also be used for
project management. In the LUMC we use
[
GitLab
](
https://git.lumc.nl
)
as a
collaborative environment on top of Git. By keeping track of all versions,
history, etc, GitLab makes your projects more reproducible and collaboration
with colleagues easy.
## Organisation
There is one submodule on which this repository depends.
## Course dates
-
**[presentation](https://git.lumc.nl/j.f.j.laros/presentation)**
template
for presentations in LaTeX.
-
October 14th, 2013: Git introduction course
-
June 23rd, 2014: Git introduction course
-
**December 1st, 2015: Data management with GitLab**
(
[
preparations
](
PREPARATIONS.md
)
)
The
**website**
directory is for storing the compiled presentations,
handouts and program. A
*Trac wiki markup*
file contains the website
content. Uploading, updating and adding attachments can be done easily with
the
[
tracwiki
](
https://pypi.python.org/pypi/tracwiki
)
program.
For corresponding snapshots of this repository, see
[
tags
](
https://git.lumc.nl/humgen/gitcourse/tags
)
.
## Usage
After cloning this repository, fetch the data from the submodule by issuing
the following two commands:
## Using the course materials
There is one
[
Git submodule
](
https://git-scm.com/book/en/v2/Git-Tools-Submodules
)
on which this repository depends:
-
**[presentation](https://git.lumc.nl/j.f.j.laros/presentation)**
template for
presentations in LaTeX.
First clone this repository, then fetch the data from the submodule:
git clone https://git.lumc.nl/humgen/gitcourse.git
cd gitcourse
git submodule init
git submodule update
(
[
More on Git submodules
](
http://git-scm.com/book/en/Git-Tools-Submodules
)
)
A new presentation can be added like this:
cd presentation
bash mkpres.sh ../mypresentation
bash mkpres.sh ../mypresentation
\ No newline at end of file
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment