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Commit c22a66bd authored by Mihai Lefter's avatar Mihai Lefter
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Merge branch 'master' of git.lumc.nl:courses/gitcourse

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README.md
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......@@ -15,38 +15,36 @@ with colleagues easy ([introduction](http://doc.gitlab.com/ce/gitlab-basics/READ
## Coordinates
In 2017 the course will be given on the following dates:
6 September (10:30 - 17:00), 22 November (9:30 - 16:30).
6 September (10:00 - 17:00), 22 November (9:30 - 16:30).
Details for the next session:
- Date: September 6th, 2017
- Time: 10:30 - 17:00
- Time: 10:00 - 17:00
- Location: 01-J-01-084
- Teachers:
- TBA
- Wibowo Arindrarto
- Jonathan Vis
- Mihai Lefter
- Registration via www.medgencentre.nl. Direct access to the [registration form](https://forms.lumc.nl/lumc2/GITcourse).
## Program
Will be updated shortly. Please find below the program from the last course
session only as a guideline.
| Time | Subject | Teacher | Contents |
| ----- | ----------------- | ----------------- | ------------------------- |
| 09:00 | [Introduction](/uploads/8d5bda06500f9aaa7c117aa6f4738667/introduction.pdf) | Jeroen Laros | Welcome, GitLab overview, SSH keys |
| 09:30 | [Practical](/uploads/61571e1506aab941a54a77bb35d4492d/introduction_handouts.pdf) | | |
| 09:45 | [Git basics](http:bit.ly/1WlfXyj) | Wibowo Arindrarto | Basic Git command line fu |
| 10:30 | [Practical](/uploads/eb2e001db4f605a343e19d23d40e754f/basics_handouts.pdf) | | |
| 11:00 | Coffee | | |
| 11:15 | [Git and remote repositories](/uploads/e1239f626e6c32a6c0bd915a0dc716ad/remotes.pdf) | Martijn Vermaat | Sharing and collaborating via GitLab |
| 10:00 | [Introduction](/uploads/8d5bda06500f9aaa7c117aa6f4738667/introduction.pdf) | Mihai Lefter | Welcome, version control introduction |
| 10:30 | [Git basics](http:bit.ly/1WlfXyj) | Wibowo Arindrarto | Basic Git command line flow |
| 11:15 | [Practical](/uploads/eb2e001db4f605a343e19d23d40e754f/basics_handouts.pdf) | | |
| 12:00 | Lunch | | |
| 13:00 | [Practical](/uploads/dff8ad1b0f947d5866acdcdc70f3d673/remotes_handouts.pdf) | | |
| 13:30 | [Data analysis](usecases/) | Szymon Kiełbasa | More GitLab, Markdown, data analysis use case |
| 14:30 | Break | | |
| 14:45 | [Combining changes by merging](/uploads/8627b6a3fcdd655217b0ea56f0b93fd0/merging.pdf) | Martijn Vermaat | Commit graph, merging, resolving merge conflicts |
| 15:30 | [Practical](/uploads/9455ef406dfeb0e3c365c015965cd899/merging_handouts.pdf) | | |
| 16:00 | Questions, closing | | |
| 13:00 | [Collaboration: remote repositories](/uploads/e1239f626e6c32a6c0bd915a0dc716ad/remotes.pdf) | Jonathan Vis | Sharing and collaborating via remotes |
| 13:45 | [Practical](/uploads/dff8ad1b0f947d5866acdcdc70f3d673/remotes_handouts.pdf) | | |
| 14:15 | Break | | |
| 14:30 | [Collaboration: combining changes by merging](/uploads/8627b6a3fcdd655217b0ea56f0b93fd0/merging.pdf) | Mihai Lefter | Commit graph, merging, resolving merge conflicts |
| 15:15 | [Practical](/uploads/9455ef406dfeb0e3c365c015965cd899/merging_handouts.pdf) | | |
| 15:45 | Break | | |
| 16:00 | [Extras]() | Mihai Lefter | GitLab, GitHub, Markdown, ... |
| 16:30 | [Practical]() | | |
| 17:00 | Questions, closing | | |
## Prerequisites
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planning/PLAN.md
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## (16:00 - 16:30) Markdown, GitLab - Mihai
## (15:30 - 16:00) Practical
## (16:30 - 17:00) Practical
remotes/remotes.tex
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\input{../shared/shared.tex}
\author{Martijn Vermaat}
\author{Jonathan K. Vis}
\title{\courseTitle}
\providecommand{\mySubTitle}{Git and remote repositories}
\providecommand{\myConference}{\courseTitle}
\providecommand{\myGroup}{}
\providecommand{\myDepartment}{Department of Human Genetics}
\providecommand{\myCenter}{Center for Human and Clinical Genetics}
\providecommand{\myCenter}{}
\providecommand{\date}{6-9-2017}
\usetheme{lumc}
......@@ -64,8 +65,8 @@ gitlab
\begin{lstlisting}[basicstyle=\ttfamily\footnotesize]
$ git remote -v
gitlab https://git.lumc.nl/m.vermaat.hg/tv-series.git (fetch)
gitlab https://git.lumc.nl/m.vermaat.hg/tv-series.git (push)
gitlab https://git.lumc.nl/zorro/tv-series.git (fetch)
gitlab https://git.lumc.nl/zorro/tv-series.git (push)
\end{lstlisting}
\lstinline{-v}: Include remote location.
......@@ -86,8 +87,8 @@ $ git remote add hue 192.168.0.8:docs/tv-series
\begin{lstlisting}[basicstyle=\ttfamily\footnotesize]
$ git remote -v
gitlab https://git.lumc.nl/m.vermaat.hg/tv-series.git (fetch)
gitlab https://git.lumc.nl/m.vermaat.hg/tv-series.git (push)
gitlab https://git.lumc.nl/zorro/tv-series.git (fetch)
gitlab https://git.lumc.nl/zorro/tv-series.git (push)
hue 192.168.0.8:docs/tv-series (fetch)
hue 192.168.0.8:docs/tv-series (push)
\end{lstlisting}
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Instead of creating repositories using \lstinline{git init}, you can create a
local {\em clone} of an existing (remote) repository.
\begin{lstlisting}[basicstyle=\ttfamily\footnotesize]
$ git clone https://git.lumc.nl/m.vermaat.hg/tv-series.git
$ git clone https://git.lumc.nl/zorro/tv-series.git
Cloning into 'tv-series'...
remote: Counting objects: 6, done.
remote: Compressing objects: 100% (4/4), done.
......@@ -186,8 +187,8 @@ Unpacking objects: 100% (6/6), done.
\begin{lstlisting}[basicstyle=\ttfamily\footnotesize]
$ cd tv-series/
$ git remote -v
origin https://git.lumc.nl/m.vermaat.hg/tv-series.git (fetch)
origin https://git.lumc.nl/m.vermaat.hg/tv-series.git (push)
origin https://git.lumc.nl/zorro/tv-series.git (fetch)
origin https://git.lumc.nl/zorro/tv-series.git (push)
\end{lstlisting}
\end{pframe}
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shared/shared.tex
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\providecommand{\courseTitle}{Code and data management with Git}
\providecommand{\myDate}{25-04-16}
\providecommand{\myDate}{06-09-17}
\providecommand{\acknowledgements}{
Martijn Vermaat\\
Wibowo Arindrarto\\
......
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