Commits · fe4faad7228e789b0cfedb9080bc8bbdc68fb3c6 · biowdl / tasks

Jul 01, 2019
- modify delly.wdl: replaced string "5G" to integer 5 in memory runtime · fe4faad7
  cagaser authored 5 years ago
  
  fe4faad7
- modify clever.wdl: replaced string "6G" to integer 6 in memory runtime · 04d2a805
  cagaser authored 5 years ago
  
  04d2a805
Jun 26, 2019
- modify clever.wdl: add 6G memory in runtime · 4ffeedfe
  cagaser authored 5 years ago
  
  4ffeedfe
- modify delly.wdl: add 6G memory in runtime · 61bc6145
  cagaser authored 5 years ago
  
  61bc6145
Jun 21, 2019
- modify tasks/picard.wdl: add renameSample task · 963be8b7
  cagaser authored 5 years ago
  
  963be8b7
- modify manta.wdl: deleted duplicates · f6062171
  cagaser authored 5 years ago
  
  f6062171
- modified: manta.wdl, add germline task for SV pipeline · 47fa56b2
  cagaser authored 5 years ago
  
  47fa56b2
- add SV task: survivor.wdl · 334ee17c
  cagaser authored 5 years ago
  
  334ee17c
- add SV task: delly.wdl · 7dc64284
  cagaser authored 5 years ago
  
  7dc64284
- add SV task: clever.wdl · 357e4300
  cagaser authored 5 years ago
  
  357e4300
- add SV task: bcftools.wdl · 32e7a8bf
  cagaser authored 5 years ago
  
  32e7a8bf
Jun 20, 2019
- Merge pull request #115 from biowdl/BIOWDL-253 · 2d5d02f2
  Cats authored 5 years ago
  
  Add bowtie
  Unverified
  
  2d5d02f2
- small mods to multiqc.wdl · a478da08
  Ruben Vorderman authored 5 years ago
  
  a478da08
Jun 19, 2019
- Merge branch 'develop' into BIOWDL-253 · ed2cccfc
  Ruben Vorderman authored 5 years ago
  
  Unverified
  
  ed2cccfc
- always output to sam · 6f704053
  Ruben Vorderman authored 5 years ago
  
  6f704053
Jun 18, 2019
- fix bowtie running · 04bfb33a
  Ruben Vorderman authored 5 years ago
  
  04bfb33a
- fix id · c790691e
  Ruben Vorderman authored 5 years ago
  
  c790691e
- add default output tables · 40748f8f
  Ruben Vorderman authored 5 years ago
  
  40748f8f
- index solved · 83b6ec7b
  Ruben Vorderman authored 5 years ago
  
  83b6ec7b
Jun 17, 2019
- Merge pull request #113 from biowdl/small_fixes · 7e73f8f8
  Ruben Vorderman authored 5 years ago
  
  Small fixes
  Unverified
  
  7e73f8f8
- add sam RG stuff · 9d7eaa0d
  Ruben Vorderman authored 5 years ago
  
  9d7eaa0d
Jun 14, 2019
- remove obsolete task, fix typo · 23af9215
  Cats authored 5 years ago
  
  23af9215
Jun 13, 2019
- add bowtie · e451d5e3
  Ruben Vorderman authored 5 years ago
  
  e451d5e3
- fix star index · 67f2dce5
  Cats authored 5 years ago
  
  67f2dce5
- fix hisat2 index input · 51a995a1
  Cats authored 5 years ago
  
  51a995a1
Jun 12, 2019
- modify index input for hisat2 · 4ed83444
  Cats authored 5 years ago
  
  4ed83444
- memory adjustments · b7e9ca35
  Cats authored 5 years ago
  
  b7e9ca35
- small fixes · 93a1c53d
  Cats authored 5 years ago
  
  93a1c53d
Jun 11, 2019
- Merge pull request #111 from biowdl/BIOWDL-245 · 46385ddc
  Ruben Vorderman authored 5 years ago
  
  simpler md5sum check
  Unverified
  
  46385ddc
- simpler md5sum check · be6d03b1
  Ruben Vorderman authored 5 years ago
  
  be6d03b1
Jun 06, 2019
- Merge pull request #110 from biowdl/BIOWDL-245 · a0a93396
  Ruben Vorderman authored 5 years ago
  
  Fixes for germline-DNA pipeline. Removal of structs. Adding outputs.
  Unverified
  
  a0a93396
- addressed review comments · 0f6459f2
  Ruben Vorderman authored 5 years ago
  
  0f6459f2
- remove glob · 9ffaa72d
  Ruben Vorderman authored 5 years ago
  
  9ffaa72d
Jun 05, 2019
- add some stats · 04aebed6
  Ruben Vorderman authored 5 years ago
  
  04aebed6
Jun 04, 2019
- add referencedict · 3ad6842e
  Ruben Vorderman authored 5 years ago
  
  3ad6842e
- add fasta fais · 069816ec
  Ruben Vorderman authored 5 years ago
  
  069816ec
- remove more structs · ecd4888f
  Ruben Vorderman authored 5 years ago
  
  ecd4888f
- destroy another struct · 47389236
  Ruben Vorderman authored 5 years ago
  
  47389236
- destroy another struct · 2afe2c05
  Ruben Vorderman authored 5 years ago
  
  2afe2c05
- destroy structs · 8b0c60c0
  Ruben Vorderman authored 5 years ago
  
  8b0c60c0