Commits · ee7d6e8cc809243c6f44caeb0e3f58ff112afdcd · biowdl / tasks

Oct 02, 2019
- Merge pull request #152 from biowdl/memory_strings · ee7d6e8c
  Ruben Vorderman authored 5 years ago
  
  Memory runtime attributes should be Strings not Ints
  ee7d6e8c
- update changelog · 730f2c97
  Cats authored 5 years ago
  
  730f2c97
- update changelog · 08e99496
  Cats authored 5 years ago
  
  08e99496
- memory Int -> String part 3 · 401808be
  Cats authored 5 years ago
  
  401808be
- Merge remote-tracking branch 'origin/develop' into memory_strings · 977b4af4
  Cats authored 5 years ago
  
  977b4af4
- memory Int -> String part 2 · 1a455271
  Cats authored 5 years ago
  
  1a455271
- Merge pull request #151 from biowdl/BIOWDL-336 · 18890859
  Ruben Vorderman authored 5 years ago
  
  Add biowdl-input-converter
  18890859
- change changelog · 533ad02d
  Ruben Vorderman authored 5 years ago
  
  533ad02d
- update changelog · 1b6557da
  Ruben Vorderman authored 5 years ago
  
  1b6557da
- debug tasks, add reasonable defaults for cromwell · c4ef5736
  Ruben Vorderman authored 5 years ago
  
  c4ef5736
Oct 01, 2019
- replace custom container with biocontainer · 76b878e3
  Ruben Vorderman authored 5 years ago
  
  76b878e3
- remove deprecated task · 49b91e5c
  Ruben Vorderman authored 5 years ago
  
  49b91e5c
- dockerImage configurable · 77a1866d
  Ruben Vorderman authored 5 years ago
  
  77a1866d
- add tasks for biowdl-input-converter · 68c5a0fa
  Ruben Vorderman authored 5 years ago
  
  68c5a0fa
- memory Int -> String part 1 · abd99d15
  Cats authored 5 years ago
  
  abd99d15
Sep 27, 2019
- Merge pull request #149 from biowdl/genotype_memory · d1d0d7ea
  Cats authored 5 years ago
  
  increase memoryMultiplier for genotypeGVCFs
  d1d0d7ea
- update changelog · d68769d5
  Cats authored 5 years ago
  
  d68769d5
- increase memorymultiplier for genotypeGVCFs · 7d713cda
  Cats authored 5 years ago
  
  7d713cda
Sep 26, 2019
- Merge pull request #148 from biowdl/BIOWDL-326 · 190c7fb6
  Cats authored 5 years ago
  
  BIOWDL-326: Add -k option to minimap2 mapping
  190c7fb6
- Update CHANGELOG.md · 8705c2d1
  Boom authored 5 years ago
  
  8705c2d1
- Add -k option to minimap2 mapping · cb929160
  Boom authored 5 years ago
  
  Based on minimap2 recommendations, the -k tag should be set to 14 for aligning directRNA Nanopore data
  cb929160
Sep 25, 2019
- Merge pull request #147 from biowdl/bwakit · 6af3ca35
  Cats authored 5 years ago
  
  Add bwakit task
  6af3ca35
- add parameter_meta for bwakit · 71b8929e
  Cats authored 5 years ago
  
  71b8929e
- update changelog · 20581d95
  Cats authored 5 years ago
  
  20581d95
- Merge remote-tracking branch 'origin/develop' into bwakit · d000fc3c
  Cats authored 5 years ago
  
  d000fc3c
- Merge pull request #146 from biowdl/BIOWDL-308 · 690aedb5
  Cats authored 5 years ago
  
  BIOWDL-308: Add the option for --MD tag to minimap2
  690aedb5
Sep 24, 2019
- Update CHANGELOG.md · f81106b4
  JB authored 5 years ago
  
  f81106b4
- Add the option for --MD tag to minimap2 · ca019697
  JB authored 5 years ago
  
  ca019697
- Merge pull request #145 from biowdl/BIOWDL-261 · adcd0063
  Cats authored 5 years ago
  
  BIOWDL-261: Update average memory needs for main TALON process
  adcd0063
Sep 23, 2019
- Update CHANGELOG.md · 68bc5eb4
  JB authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  68bc5eb4
- Update scripts submodule and CHANGELOG version number · c7ada263
  JB authored 5 years ago
  
  c7ada263
Sep 20, 2019
- Merge branch 'develop' into BIOWDL-261 · d40fe80e
  JB authored 5 years ago
  
  d40fe80e
- setting next version · e98a95f0
  Ruben Vorderman authored 5 years ago
  
  e98a95f0
- fixed version · 3fc501f2
  Ruben Vorderman authored 5 years ago
  
  View commit 3fc501f2 2 tags
  
  3fc501f2
Sep 18, 2019
- Update scripts submodule · 7c172d31
  JB authored 5 years ago
  
  7c172d31
- Update CHANGELOG for TALON update · 00bb4b6a
  JB authored 5 years ago
  
  00bb4b6a
- Update average memory needs for main TALON process · fe8da1de
  JB authored 5 years ago
  
  fe8da1de
- Merge pull request #144 from biowdl/BIOWDL-309 · 77fd7927
  Cats authored 5 years ago
  
  Add "SampleConfigToSampleReadgroupLists" task to common.wdl
  77fd7927
Sep 17, 2019
- Add "SampleConfigToSampleReadgroupLists" task to common.wdl · 4b0fbb40
  JB authored 5 years ago
  
  4b0fbb40
Sep 16, 2019
- Fix highly overestimated memory requirement. · 4886c4f2
  Ruben Vorderman authored 5 years ago
  
  4886c4f2