Commits · e98a95f05536ee4a7499ea114313309549767da8 · biowdl / tasks

Sep 20, 2019
- setting next version · e98a95f0
  Ruben Vorderman authored 5 years ago
  
  e98a95f0
- fixed version · 3fc501f2
  Ruben Vorderman authored 5 years ago
  
  View commit 3fc501f2 2 tags
  
  3fc501f2
Sep 18, 2019
- Merge pull request #144 from biowdl/BIOWDL-309 · 77fd7927
  Cats authored 5 years ago
  
  Add "SampleConfigToSampleReadgroupLists" task to common.wdl
  77fd7927
Sep 17, 2019
- Add "SampleConfigToSampleReadgroupLists" task to common.wdl · 4b0fbb40
  JB authored 5 years ago
  
  4b0fbb40
Sep 16, 2019
- Fix highly overestimated memory requirement. · 4886c4f2
  Ruben Vorderman authored 5 years ago
  
  4886c4f2
Sep 13, 2019
- Merge pull request #143 from biowdl/clean_up · 69fdf193
  Ruben Vorderman authored 5 years ago
  
  Clean up
  69fdf193
- small style changes · 62a1b319
  Cats authored 5 years ago
  
  62a1b319
Sep 12, 2019
- update changelog · 990e14d2
  Cats authored 5 years ago
  
  990e14d2
- set interactive to true by default in multiqc · b963d209
  Cats authored 5 years ago
  
  b963d209
- Merge remote-tracking branch 'origin/develop' into clean_up · 29df9597
  Cats authored 5 years ago
  
  29df9597
- Merge pull request #142 from biowdl/BIOWDL-310 · 52852dfb
  Cats authored 5 years ago
  
  BIOWDL-310: Update TranscriptClean container to version 1.0.8
  52852dfb
- Update CHANGELOG for TranscriptClean version update · 3f4383e8
  JB authored 5 years ago
  
  3f4383e8
- Update TranscriptClean container to version 1.0.8 · 655c0e1d
  JB authored 5 years ago
  
  655c0e1d
Sep 11, 2019
- Merge pull request #141 from biowdl/biowdl-307 · a0bfd011
  Cats authored 5 years ago
  
  update samtools and htseq-count tasks for supporting more memory efficient counting (e.g. using name sorted bams)
  a0bfd011
- processed review of Davy. · f037c38a
  Mei authored 5 years ago
  
  f037c38a
- updated the changelog. · 36181551
  Mei authored 5 years ago
  
  36181551
- Merge remote-tracking branch 'origin/develop' into biowdl-307 · 1724ee74
  Mei authored 5 years ago
  
  1724ee74
- support name based sorting in smallRNA pipeline · 33f53d10
  Mei authored 5 years ago
  
  33f53d10
Sep 10, 2019
- remove deprecayed tasks · 2fa11a2c
  Cats authored 5 years ago
  
  2fa11a2c
- cleanup gffcompare.wdl · 599f6fed
  Cats authored 5 years ago
  
  599f6fed
- simplify BaseRecalibrator task · b4c3601a
  Cats authored 5 years ago
  
  b4c3601a
- containerize common.wdl part 2 · 9a200418
  Cats authored 5 years ago
  
  9a200418
- Merge pull request #140 from biowdl/BIOWDL-269 · d40e5a34
  Cats authored 5 years ago
  
  Removed "pipefail" from command sections TALON and TranscriptClean
  d40e5a34
Sep 09, 2019
- Removed "pipefail" from command sections TALON and TranscriptClean because no... · abdec8e2
  JB authored 5 years ago
  
  Removed "pipefail" from command sections TALON and TranscriptClean because no pipes are used. (Based on minimap2.wdl pull request)
  abdec8e2
- Merge pull request #139 from biowdl/BIOWDL-258 · d325572f
  Cats authored 5 years ago
  
  BIOWDL-258: Add WDL task for Minimap2
  d325572f
Sep 06, 2019
- containerize common.wdl · 713a1f20
  Cats authored 5 years ago
  
  713a1f20
- Reset set -e · 72ebdbc7
  JB authored 5 years ago
  
  72ebdbc7
- cleanup bwa.wdl · 9a15b0e8
  Cats authored 5 years ago
  
  9a15b0e8
- cleanup bedtools.wdl · 8057d079
  Cats authored 5 years ago
  
  8057d079
- Removed "pipefail" from command sections and altered "secondaryAlignment" Boolean · 5596c3da
  JB authored 5 years ago
  
  5596c3da
- Fixed indentation in command sections · 102bff10
  JB authored 5 years ago
  
  102bff10
- Update CHANGELOG with new Minimap2 task · 92280bb4
  JB authored 5 years ago
  
  92280bb4
- Add WDL task for Minimap2 · e935658a
  JB authored 5 years ago
  
  e935658a
Sep 05, 2019
- Merge pull request #138 from biowdl/BIOWDL-260 · b0c7054f
  Ruben Vorderman authored 5 years ago
  
  BIOWDL-260: Add WDL task for TALON
  b0c7054f
- Fixed womtools validation error · 00feb5f0
  JB authored 5 years ago
  
  00feb5f0
- Update CHANGELOG with new TALON task · 37a8b06f
  JB authored 5 years ago
  
  37a8b06f
- Add WDL task for TALON · bb8f0808
  JB authored 5 years ago
  
  bb8f0808
Sep 04, 2019
- Merge pull request #134 from biowdl/BIOWDL-259 · 924e318e
  Cats authored 5 years ago
  
  BIOWDL-259: Add WDL task for TranscriptClean
  924e318e
- Merge branch 'develop' into BIOWDL-259 · 955c582c
  JB authored 5 years ago
  
  955c582c
- Removed test workflow · ec25278d
  JB authored 5 years ago
  
  ec25278d