Commits · db8573bac69933bdd82d4c350a051d73e0b41e67 · biowdl / tasks

Oct 28, 2022
- Add @DavyCats' suggestions · 3c53b47f
  Ruben Vorderman authored 2 years ago
  
  3c53b47f
- Add time_minutes dockerimage and update parameter_meta · 61161df0
  Ruben Vorderman authored 2 years ago
  
  61161df0
- Use samtools dict instead of Picard CreateSequenceDictionary · c6fe0300
  Ruben Vorderman authored 2 years ago
  
  c6fe0300
Oct 25, 2022
- Make index use the basename of the file · 2dc14b39
  Ruben Vorderman authored 2 years ago
  
  2dc14b39
Aug 22, 2022
- Use gebibytes instead of gigabytes · 8993b5c6
  Ruben Vorderman authored 2 years ago
  
  8993b5c6
Jul 27, 2021
- fix validation issues · dcafd290
  Cats authored 3 years ago
  
  dcafd290
Jul 21, 2021
- remove duplicate memory · bc1bacf1
  cagaser authored 3 years ago
  
  bc1bacf1
Jul 20, 2021
- update samtools.wdl somaticseq.wdl: add memory runtime · c9c36cf8
  cagaser authored 3 years ago
  
  c9c36cf8
Jul 19, 2021
- update common.wdl fastqc.wdl samtools.wdl somaticseq.wdl umi-tools.wdl... · 1fbf3eac
  cagaser authored 3 years ago
  
  update common.wdl fastqc.wdl samtools.wdl somaticseq.wdl umi-tools.wdl wisestork.wdl: add runtime memory
  1fbf3eac
Jul 02, 2021
- fix missing memory runtime BgzipAndIndex · 7f4433f5
  Cats authored 3 years ago
  
  7f4433f5
Jun 15, 2021
- Add directory creation to samtools fastq. · f2f7411a
  JasperBoom authored 3 years ago
  
  f2f7411a
May 19, 2021
- adjust runtime settings · 32c08100
  Cats authored 3 years ago
  
  32c08100
Nov 19, 2020
- Update versions. · 70b34844
  JasperBoom authored 4 years ago
  
  70b34844
Nov 11, 2020
- Update samtools. · ccc38727
  JasperBoom authored 4 years ago
  
  ccc38727
- Update 2 new tasks. · 3eeef3f7
  JasperBoom authored 4 years ago
  
  3eeef3f7
Nov 02, 2020
- Add last set of updates. · d101e77c
  JasperBoom authored 4 years ago
  
  d101e77c
- Update layout samtools.wdl. · f81a99e8
  JasperBoom authored 4 years ago
  
  f81a99e8
Oct 28, 2020
- Update parameter meta · 61ba7355
  van den Berg authored 4 years ago
  
  61ba7355
Oct 22, 2020
- Add memory to samtools Merge · 37ba60dd
  van den Berg authored 4 years ago
  
  37ba60dd
Oct 07, 2020
- Simplify lima output structure · 571544cb
  van den Berg authored 4 years ago
  
  571544cb
Oct 06, 2020
- Update samtools.wdl · afe60006
  van den Berg authored 4 years ago
  
  Co-authored-by: Davy Cats <davycats.dc@gmail.com>
  Unverified
  
  afe60006
Oct 02, 2020
- Add parameter meta for threads · 35bc2ba3
  van den Berg authored 4 years ago
  
  35bc2ba3
Jul 22, 2020
- Fix last set of tasks. · 4fbfe713
  JasperBoom authored 4 years ago
  
  4fbfe713
Jul 16, 2020
- update samtools image · 3e254fea
  Ruben Vorderman authored 4 years ago
  
  3e254fea
Jul 06, 2020
- Reduce flagstat memory · a18806aa
  Ruben Vorderman authored 4 years ago
  
  a18806aa
Jun 30, 2020
- fix samtools merge · 2ec5b8e3
  Ruben Vorderman authored 4 years ago
  
  2ec5b8e3
- Add threads to samtools · e3ba9aa0
  Ruben Vorderman authored 4 years ago
  
  e3ba9aa0
Jun 29, 2020
- correct additional threads · b81efca4
  Ruben Vorderman authored 4 years ago
  
  b81efca4
Jun 26, 2020
- Increase time estimates for sort tasks · ddae5764
  Ruben Vorderman authored 4 years ago
  
  ddae5764
Jun 24, 2020
- add threads on index as well · 45ffa553
  Ruben Vorderman authored 4 years ago
  
  45ffa553
- Make sure samtools uses memory · 99647123
  Ruben Vorderman authored 4 years ago
  
  99647123
Jun 22, 2020
- Update samtools sort to also index · 0c9ba9ae
  Ruben Vorderman authored 4 years ago
  
  0c9ba9ae
May 07, 2020
- fix task order samtools and remove duplicate task · ac71e415
  Cats authored 4 years ago
  
  ac71e415
- fix samtools sort · 1a90d56f
  Cats authored 4 years ago
  
  1a90d56f
May 06, 2020
- various changes · c33f00ed
  Cats authored 4 years ago
  
  c33f00ed
- time_minutes! · 84ba1ef7
  Cats authored 4 years ago
  
  84ba1ef7
Apr 28, 2020
- Fix quotations in samtools sort. · d9265c31
  JasperBoom authored 4 years ago
  
  d9265c31
Apr 21, 2020
- Fix travis error. · c03c5562
  JasperBoom authored 4 years ago
  
  c03c5562
- Reinstate symlink. · a80da1d9
  JasperBoom authored 4 years ago
  
  a80da1d9
- Address comments. · 441890ee
  JasperBoom authored 4 years ago
  
  441890ee