fix validation issues

peach.wdl

@@ -52,7 +52,7 @@ task Peach {
         File callsTsv = "~{outputDir}/~{tumorName}.peach.calls.tsv"
         File filteredVcf = "~{outputDir}/~{tumorName}.peach.filtered.vcf"
         File genotypeTsv = "~{outputDir}/~{tumorName}.peach.genotype.tsv"
-        Array[File] outputs = [callsTsv, filterVcf, genotypeTsv]
+        Array[File] outputs = [callsTsv, filteredVcf, genotypeTsv]
     }
 
     runtime {

samtools.wdl

@@ -28,7 +28,6 @@ task BgzipAndIndex {
 
         String memory = "2G"
         Int timeMinutes = 1 + ceil(size(inputFile, "G"))
-        String memory = "1G"
         String dockerImage = "quay.io/biocontainers/tabix:0.2.6--ha92aebf_0"
     }
 
@@ -59,7 +58,6 @@ task BgzipAndIndex {
         type: {description: "The type of file (eg. vcf or bed) to be compressed and indexed.", category: "common"}
         memory: {description: "The amount of memory this job will use.", category: "advanced"}
         timeMinutes: {description: "The maximum amount of time the job will run in minutes.", category: "advanced"}
-        memory: {description: "The amount of memory available to the job.", category: "advanced"}
         dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
 
         # outputs

scripts @ c31670d3

-Subproject commit 84690a30eb0dde2bfdfaff9abf097b6f4c49dfd8
+Subproject commit c31670d3a9222a2feafc649cbc118c95afbc7189