Commits · ca18e05566c911a92b81471527ae74788abd857f · biowdl / tasks

Jan 31, 2020
- Add Centrifuge specific Krona task. · ca18e055
  JasperBoom authored 5 years ago
  
  ca18e055
Jan 30, 2020
- Replace moving with hardlinking. · 7ba4c125
  JasperBoom authored 5 years ago
  
  7ba4c125
- Fix command section for Inspect. · 457a3437
  JasperBoom authored 5 years ago
  
  457a3437
- Fix Centrifuge tests, where sometimes the index files could still not be located. · b260dad4
  JasperBoom authored 5 years ago
  
  b260dad4
Jan 29, 2020
- Update CHANGELOG. · 790444da
  JasperBoom authored 5 years ago
  
  790444da
- Update parameter_meta and fix centrifuge index locating. · 2105f016
  JasperBoom authored 5 years ago
  
  2105f016
Jan 28, 2020
- Fix issue where Centrifuge could not locate index files. · 5183e34f
  JasperBoom authored 5 years ago
  
  5183e34f
Jan 27, 2020
- Fix issue where centrifuge would fail on incorrect paths. · 57b7c80c
  JasperBoom authored 5 years ago
  
  57b7c80c
Jan 23, 2020
- Centrifuge should use -U instead of -1 with single end data. · 1ab404fe
  JasperBoom authored 5 years ago
  
  1ab404fe
Jan 17, 2020
- Fix CI error. · 3d752965
  JasperBoom authored 5 years ago
  
  3d752965
- Rename cores to threads. · da98e664
  JasperBoom authored 5 years ago
  
  da98e664
- Update LINCENSE date. · 948e3ca0
  JasperBoom authored 5 years ago
  
  948e3ca0
- Update centrifuge.wdl · e707ed95
  Jasper Boom authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  Unverified
  
  e707ed95
Jan 16, 2020
- Reformat parameter_meta. · 9de764c4
  JasperBoom authored 5 years ago
  
  9de764c4
Jan 14, 2020
- Remove trailing spaces after \. · 4255eca7
  JasperBoom authored 5 years ago
  
  4255eca7
- Update parameter_meta and fix womtool validate error. · d17d5ca2
  JasperBoom authored 5 years ago
  
  d17d5ca2
- Add new centrifuge tasks. · 3fc31f09
  JasperBoom authored 5 years ago
  
  3fc31f09
Oct 02, 2019
- memory Int -> String part 3 · 401808be
  Cats authored 5 years ago
  
  401808be
Sep 06, 2019
- containerize common.wdl · 713a1f20
  Cats authored 5 years ago
  
  713a1f20
Sep 03, 2018
- Fixed -U arg · b683cc77
  Pappas authored 6 years ago
  
  b683cc77
Aug 31, 2018
- Added comment · ef6db0ef
  Peter van 't Hof authored 6 years ago
  
  ef6db0ef
Jul 24, 2018
- turn optional with default into mandatory with default · 6425926f
  Cats authored 6 years ago
  
  6425926f
Jul 23, 2018
- added stylish newlines · 3d8b32b2
  Ruben Vorderman authored 6 years ago
  
  3d8b32b2
- style fixes · 2b903b2b
  Ruben Vorderman authored 6 years ago
  
  2b903b2b
- centrifuge to 1.0 · 37f0afb7
  Ruben Vorderman authored 6 years ago
  
  37f0afb7
Jun 20, 2018
- Add more memory · 9305e435
  Peter van 't Hof authored 6 years ago
  
  9305e435
Jun 05, 2018
- Better control of kreport output · 2b4ad659
  Pappas authored 6 years ago
  
  2b4ad659
- centrifuge input from File to Array[File] and style fixes · af259d7d
  Pappas authored 6 years ago
  
  af259d7d
May 14, 2018
- Requested changes · 6cc4acb4
  Pappas authored 6 years ago
  
  6cc4acb4
May 11, 2018
- Fix command indentation · a7a1986c
  Pappas authored 6 years ago
  
  a7a1986c
- Change copyright year · 45f40cb8
  Pappas authored 6 years ago
  
  45f40cb8
- Update centrifuge command and add kreport task · a8a6af81
  Pappas authored 6 years ago
  
  a8a6af81
May 09, 2018
- Added classify task and reordered alphabetically · c5815a22
  Pappas authored 6 years ago
  
  c5815a22
Feb 08, 2018
- use proper mkdir and dirname commands · e63040a8
  Ruben Vorderman authored 7 years ago
  
  e63040a8
Jan 29, 2018
- add preCommand · 9f1537d0
  Ruben Vorderman authored 7 years ago
  
  9f1537d0
Jan 17, 2018
- initial commit · 618df913
  Ruben Vorderman authored 7 years ago
  
  618df913