Commits · c6fe0300c5d2e5275739148c051f931e717cd6f1 · biowdl / tasks

Oct 28, 2022
- Use samtools dict instead of Picard CreateSequenceDictionary · c6fe0300
  Ruben Vorderman authored 2 years ago
  
  c6fe0300
Oct 26, 2022
- Add indexing tasks to the changelog · 46bf6537
  Ruben Vorderman authored 2 years ago
  
  46bf6537
Oct 25, 2022
- Make index use the basename of the file · 2dc14b39
  Ruben Vorderman authored 2 years ago
  
  2dc14b39
- Use the basename of the input file for index names · af929db9
  Ruben Vorderman authored 2 years ago
  
  af929db9
Oct 24, 2022
- Make sure index task works · 4431b259
  Ruben Vorderman authored 2 years ago
  
  4431b259
- Copy reference to prevent problems · 23b324ea
  Ruben Vorderman authored 2 years ago
  
  23b324ea
- Add a Bwa index task · f05d968d
  Ruben Vorderman authored 2 years ago
  
  f05d968d
Oct 21, 2022
- Add a task to produce fasta indices · c7754754
  Ruben Vorderman authored 2 years ago
  
  c7754754
Aug 22, 2022
- Merge pull request #305 from biowdl/BIOWDL-596 · 8c41db81
  Ruben Vorderman authored 2 years ago
  
  Use gebibytes instead of gigabytes
  Unverified
  
  8c41db81
- Update changelog with memory change · 5523913a
  Ruben Vorderman authored 2 years ago
  
  5523913a
- Use gebibytes instead of gigabytes · 8993b5c6
  Ruben Vorderman authored 2 years ago
  
  8993b5c6
Aug 08, 2022
- make purple's somaticRainfallPlot output optional · 24cc6213
  Cats authored 2 years ago
  
  24cc6213
Aug 02, 2022
- Merge pull request #304 from biowdl/performance · f7f65018
  Cats authored 2 years ago
  
  Performance changes for WGSinCancerDiagnostics
  Unverified
  
  f7f65018
- update changelog · e43bf3e4
  Cats authored 2 years ago
  
  e43bf3e4
- Merge branch 'develop' into performance · 50b31fed
  Cats authored 2 years ago
  
  Unverified
  
  50b31fed
- increase time for cobalt · e996b793
  Cats authored 2 years ago
  
  e996b793
Jul 28, 2022
- Merge pull request #303 from biowdl/sage · 750fb263
  Cats authored 2 years ago
  
  Updates for WGSinCancerDiagnostics
  Unverified
  
  750fb263
Jul 18, 2022
- fix linting issue · 743e4e06
  Cats authored 2 years ago
  
  743e4e06
- update changelog · 9625c84b
  Cats authored 2 years ago
  
  9625c84b
- Merge branch 'develop' into sage · f5f81419
  Cats authored 2 years ago
  
  Unverified
  
  f5f81419
- fix typo in star GenomeGenerate parameter_meta · cbd6de84
  Cats authored 2 years ago
  
  cbd6de84
Jul 04, 2022
- Merge pull request #302 from biowdl/gridss_annotate · c4b13ec6
  Cats authored 2 years ago
  
  Add GT to gridss results in AnnotateSvTypes
  Unverified
  
  c4b13ec6
- Merge branch 'develop' into gridss_annotate · c91a657c
  Cats authored 2 years ago
  
  Unverified
  
  c91a657c
- Add GT to gridss results in AnnotateSvTypes · 0f3cb30d
  Cats authored 2 years ago
  
  0f3cb30d
- Merge pull request #301 from biowdl/gridss_annotate · 1c1cd589
  Cats authored 2 years ago
  
  Add a task to add SVTYPE annotations to GRIDSS results
  Unverified
  
  1c1cd589
- update changelog · 3af704d6
  Cats authored 2 years ago
  
  3af704d6
Jul 01, 2022
- increase memory for bcftools sort · 8e7ca0ce
  Cats authored 2 years ago
  
  8e7ca0ce
- give bcftools sort more time · 760f89e9
  Cats authored 2 years ago
  
  760f89e9
Jun 30, 2022
- fix duoble .bgz and and index to output · 358c946d
  Cats authored 2 years ago
  
  358c946d
- detect if compressed · 4e2a09e1
  Cats authored 2 years ago
  
  4e2a09e1
- fix output name · 39af0ad7
  Cats authored 2 years ago
  
  39af0ad7
- fix heredoc · 01aa41d2
  Cats authored 2 years ago
  
  01aa41d2
Jun 23, 2022
- increase sage memory · 4608518f
  Cats authored 2 years ago
  
  4608518f
Jun 22, 2022
- adjust sage memory and time · af5cf337
  Cats authored 2 years ago
  
  af5cf337
Jun 17, 2022
- adjust some runtime settings · 873ece6f
  Cats authored 2 years ago
  
  873ece6f
Jun 16, 2022
- adjust gridss threads · bd153caa
  Cats authored 2 years ago
  
  bd153caa
Apr 08, 2022
- typo · 1b4238c6
  Cats authored 2 years ago
  
  1b4238c6
- copy paste error · 87bb3c4f
  Cats authored 2 years ago
  
  87bb3c4f
- add task for sv type annotation of gridss results · 1c02ce1e
  Cats authored 2 years ago
  
  1c02ce1e
Mar 18, 2022
- Merge pull request #300 from biowdl/fix_gridss_tbi · 25f49471
  Cats authored 3 years ago
  
  run tabix if vcf index is missing in gridss
  Unverified
  
  25f49471