Commits · b131d926dd3cb7e2dc59adecb015fa09d1e3d3bc · biowdl / tasks

Oct 30, 2020
- Edit another batch of tasks to uniform layout. · b131d926
  JasperBoom authored 4 years ago
  
  b131d926
Jun 16, 2020
- add javaxmx parameter_meta · e45b413f
  Ruben Vorderman authored 4 years ago
  
  e45b413f
Jun 05, 2020
- Add missing \ · 56437e74
  Ruben Vorderman authored 4 years ago
  
  56437e74
- Skip the Perl wrapper and talk to fastq jar directly · a8c2b90a
  Ruben Vorderman authored 4 years ago
  
  a8c2b90a
May 06, 2020
- minor adjustments · 515df50d
  Cats authored 4 years ago
  
  515df50d
Apr 08, 2020
- even more time_minutes · 605bba8d
  Cats authored 5 years ago
  
  605bba8d
Apr 07, 2020
- put requirements as defaults · 271cc57a
  Ruben Vorderman authored 5 years ago
  
  271cc57a
Apr 06, 2020
- move estimates to runtime section · 44f87bde
  Ruben Vorderman authored 5 years ago
  
  44f87bde
Apr 02, 2020
- rename time parameter · 3d59d9b8
  Ruben Vorderman authored 5 years ago
  
  3d59d9b8
- estimate cutadapt memory and runtime · 4fb4583e
  Ruben Vorderman authored 5 years ago
  
  4fb4583e
- make estimates overrideable · 802b65e6
  Ruben Vorderman authored 5 years ago
  
  802b65e6
- Add fastqc requirements · 619781f2
  Ruben Vorderman authored 5 years ago
  
  619781f2
Mar 18, 2020
- update default fastqc container since it fixes several bugs · 75172098
  Ruben Vorderman authored 5 years ago
  
  75172098
Feb 11, 2020
- add license headers · 407435d8
  Ruben Vorderman authored 5 years ago
  
  407435d8
Jan 27, 2020
- make memory configurable in fastqc · 95a40971
  Cats authored 5 years ago
  
  95a40971
Dec 11, 2019
- a few more linting things · f1204645
  Cats authored 5 years ago
  
  f1204645
Oct 31, 2019
- adress comments · d77aee4c
  Cats authored 5 years ago
  
  d77aee4c
- typo · cd57b145
  Cats authored 5 years ago
  
  cd57b145
- add parameter_meta to fastqc · 2fe5710c
  Cats authored 5 years ago
  
  2fe5710c
Oct 02, 2019
- memory Int -> String part 2 · 1a455271
  Cats authored 5 years ago
  
  1a455271
Jun 24, 2019
- docker image for cutadapt and fastqc · 1790b868
  Ruben Vorderman authored 5 years ago
  
  1790b868
May 07, 2019
- correct outputs · 42da877d
  Ruben Vorderman authored 5 years ago
  
  42da877d
- set extract default to false · b2918a10
  Ruben Vorderman authored 5 years ago
  
  b2918a10
Apr 05, 2019
- reduce memory for GetConfiguration · 6a0abb57
  Cats authored 6 years ago
  
  6a0abb57
Apr 04, 2019
- small fixes · 4687394a
  Cats authored 6 years ago
  
  4687394a
Feb 22, 2019
- some clean up · 4da285de
  Cats authored 6 years ago
  
  4da285de
Feb 07, 2019
- add docker for extract adapters, catadapt and fastqc · 9e8bf82a
  Cats authored 6 years ago
  
  9e8bf82a
Oct 19, 2018
- fixed fastqc call-caching · 99e7c30a
  Ruben Vorderman authored 6 years ago
  
  99e7c30a
Aug 10, 2018
- use proper perl-style regexes · 3f54ab63
  Ruben Vorderman authored 6 years ago
  
  3f54ab63
Jul 24, 2018
- turn optional with default into mandatory with default · 6425926f
  Cats authored 6 years ago
  
  6425926f
Jul 23, 2018
- added stylish newlines · 3d8b32b2
  Ruben Vorderman authored 6 years ago
  
  3d8b32b2
- style fixes · 2b903b2b
  Ruben Vorderman authored 6 years ago
  
  2b903b2b
- fastqc to 1.0 · 39cbad54
  Ruben Vorderman authored 6 years ago
  
  39cbad54
Jun 14, 2018
- Revert "Added glob's to output files" · 691a6392
  Peter van 't Hof authored 6 years ago
  
  This reverts commit 138d3606
  691a6392
- Revert "Fixing output" · 830a39b8
  Peter van 't Hof authored 6 years ago
  
  This reverts commit 17af04e8
  830a39b8
- Fixing output · 17af04e8
  Peter van 't Hof authored 6 years ago
  
  17af04e8
- Added glob's to output files · 138d3606
  Peter van 't Hof authored 6 years ago
  
  138d3606
May 28, 2018
- move extractadaptersfastqc to biopet · 32706126
  Ruben Vorderman authored 6 years ago
  
  32706126
May 07, 2018
- evaluate outputpaths before command section · 30bfec34
  Ruben Vorderman authored 6 years ago
  
  View commits for tag phhv1assembly phhv1assembly
  
  30bfec34
Apr 10, 2018
- change memory settings · f6d9691c
  Cats authored 7 years ago
  
  f6d9691c