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Commit 619781f2 authored by Ruben Vorderman's avatar Ruben Vorderman
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Add fastqc requirements

parent 6a93ad83
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......@@ -38,7 +38,7 @@ task Fastqc {
String? dir
Int threads = 1
String memory = "4G"
String memory = "1G"
String dockerImage = "quay.io/biocontainers/fastqc:0.11.9--0"
Array[File]? NoneArray
File? NoneFile
......@@ -80,10 +80,12 @@ task Fastqc {
Array[File]? images = if extract then glob(reportDir + "/Images/*.png") else NoneArray
}
Int estimatedRuntime = 1 + ceil(size(seqFile, "G")) * 4
runtime {
cpu: threads
memory: memory
docker: dockerImage
runtime_minutes: estimatedRuntime
}
parameter_meta {
......
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