Commits · a02ecad2c02889689ddf2a1266ab8ae22b12a6ce · biowdl / tasks

Jun 25, 2019
- add fasta index · a02ecad2
  Ruben Vorderman authored 5 years ago
  
  a02ecad2
- reStructuring. Get it? Struct! Hahahaha. · 88b51b9f
  Ruben Vorderman authored 5 years ago
  
  Honestly. So much overengineering. The output is a struct. But this causes problems down the line, so in the calling pipeline, the structs are immediately deconStructed in their member parts. What is the point???
  88b51b9f
- dockerImage somaticseq · 14dcd561
  Ruben Vorderman authored 5 years ago
  
  14dcd561
- add dockerImage · 24422854
  Ruben Vorderman authored 5 years ago
  
  24422854
- move to dockerImages · c2412151
  Ruben Vorderman authored 5 years ago
  
  c2412151
- fix input · ab3a4f9f
  Ruben Vorderman authored 5 years ago
  
  ab3a4f9f
- remove struct · fbb2945a
  Ruben Vorderman authored 5 years ago
  
  fbb2945a
- remove struct input · 87abd6b5
  Ruben Vorderman authored 5 years ago
  
  87abd6b5
Jun 24, 2019
- add preAdapterSummary · 0564fd09
  Ruben Vorderman authored 5 years ago
  
  0564fd09
- dockerImage for samtools · 8e8f9009
  Ruben Vorderman authored 5 years ago
  
  8e8f9009
- add dockerImages · 334705b6
  Ruben Vorderman authored 5 years ago
  
  334705b6
- Markduplicates dockerimage · fadb9017
  Ruben Vorderman authored 5 years ago
  
  fadb9017
- Merge branch 'BIOWDL-247' of https://github.com/biowdl/tasks into BIOWDL-247 · 70811600
  Ruben Vorderman authored 5 years ago
  
  70811600
- typo · 7af2606d
  Ruben Vorderman authored 5 years ago
  
  7af2606d
- docker image for cutadapt and fastqc · 1790b868
  Ruben Vorderman authored 5 years ago
  
  1790b868
- create dockerImage stuff · 4b51b2ff
  Ruben Vorderman authored 5 years ago
  
  4b51b2ff
- set core usage · 65c885b7
  Ruben Vorderman authored 5 years ago
  
  65c885b7
- add fastqsplitter · 8f3e73f4
  Ruben Vorderman authored 5 years ago
  
  8f3e73f4
Jun 20, 2019
- Merge pull request #115 from biowdl/BIOWDL-253 · 2d5d02f2
  Cats authored 5 years ago
  
  Add bowtie
  2d5d02f2
- small mods to multiqc.wdl · a478da08
  Ruben Vorderman authored 5 years ago
  
  a478da08
Jun 19, 2019
- Merge branch 'develop' into BIOWDL-253 · ed2cccfc
  Ruben Vorderman authored 5 years ago
  
  ed2cccfc
- always output to sam · 6f704053
  Ruben Vorderman authored 5 years ago
  
  6f704053
Jun 18, 2019
- fix bowtie running · 04bfb33a
  Ruben Vorderman authored 5 years ago
  
  04bfb33a
- fix id · c790691e
  Ruben Vorderman authored 5 years ago
  
  c790691e
- add default output tables · 40748f8f
  Ruben Vorderman authored 5 years ago
  
  40748f8f
- index solved · 83b6ec7b
  Ruben Vorderman authored 5 years ago
  
  83b6ec7b
Jun 17, 2019
- Merge pull request #113 from biowdl/small_fixes · 7e73f8f8
  Ruben Vorderman authored 5 years ago
  
  Small fixes
  7e73f8f8
- add sam RG stuff · 9d7eaa0d
  Ruben Vorderman authored 5 years ago
  
  9d7eaa0d
Jun 14, 2019
- remove obsolete task, fix typo · 23af9215
  Cats authored 5 years ago
  
  23af9215
Jun 13, 2019
- add bowtie · e451d5e3
  Ruben Vorderman authored 5 years ago
  
  e451d5e3
- fix star index · 67f2dce5
  Cats authored 5 years ago
  
  67f2dce5
- fix hisat2 index input · 51a995a1
  Cats authored 5 years ago
  
  51a995a1
Jun 12, 2019
- modify index input for hisat2 · 4ed83444
  Cats authored 5 years ago
  
  4ed83444
- memory adjustments · b7e9ca35
  Cats authored 5 years ago
  
  b7e9ca35
- small fixes · 93a1c53d
  Cats authored 5 years ago
  
  93a1c53d
Jun 11, 2019
- Merge pull request #111 from biowdl/BIOWDL-245 · 46385ddc
  Ruben Vorderman authored 5 years ago
  
  simpler md5sum check
  46385ddc
- simpler md5sum check · be6d03b1
  Ruben Vorderman authored 5 years ago
  
  be6d03b1
Jun 06, 2019
- Merge pull request #110 from biowdl/BIOWDL-245 · a0a93396
  Ruben Vorderman authored 5 years ago
  
  Fixes for germline-DNA pipeline. Removal of structs. Adding outputs.
  a0a93396
- addressed review comments · 0f6459f2
  Ruben Vorderman authored 5 years ago
  
  0f6459f2
- remove glob · 9ffaa72d
  Ruben Vorderman authored 5 years ago
  
  9ffaa72d