Commits · 8ad19fb9389bc0c9f5a29ba47271899e4fade69e · biowdl / tasks

Feb 19, 2019
- add multicontainers · 8ad19fb9
  Ruben Vorderman authored 6 years ago
  
  8ad19fb9
- fix typo · 9da1cf0a
  Ruben Vorderman authored 6 years ago
  
  9da1cf0a
- remove redundant inputs · 2b183db6
  Ruben Vorderman authored 6 years ago
  
  2b183db6
- enable containers for picard · 8ec3976c
  Ruben Vorderman authored 6 years ago
  
  8ec3976c
Feb 11, 2019
- Merge pull request #88 from biowdl/BIOWDL-192 · 8cad4b24
  Cats authored 6 years ago
  
  add docker for extract adapters, catadapt and fastqc
  Unverified
  
  8cad4b24
Feb 07, 2019
- add docker for extract adapters, catadapt and fastqc · 9e8bf82a
  Cats authored 6 years ago
  
  9e8bf82a
Feb 04, 2019
- Merge pull request #87 from biowdl/BIOWDL-178 · 61bdc897
  Cats authored 6 years ago
  
  Saner input for cutadapt
  Unverified
  
  61bdc897
Feb 01, 2019
- remove import from simple task · 5e23c34a
  Ruben Vorderman authored 6 years ago
  
  5e23c34a
- Merge pull request #86 from biowdl/add_docker · aa369fea
  Cats authored 6 years ago
  
  Add docker for samtools and STAR
  Unverified
  
  aa369fea
Jan 21, 2019
- add docker to other samtools tasks · c2935cd0
  Cats authored 6 years ago
  
  c2935cd0
- add docker runtime for star and samtools index · 7cdc1c77
  Cats authored 6 years ago
  
  7cdc1c77
Jan 08, 2019
- Merge pull request #85 from biowdl/PYT-8 · dd3bc65c
  Cats authored 6 years ago
  
  Make tasks suitable for running against relative paths.
  Unverified
  
  dd3bc65c
- use files not string · 1dcdf24a
  Ruben Vorderman authored 6 years ago
  
  1dcdf24a
Jan 07, 2019
- fix file · 9c2b7953
  Ruben Vorderman authored 6 years ago
  
  9c2b7953
- fix dbsnparg · c37d775c
  Ruben Vorderman authored 6 years ago
  
  c37d775c
- fix reference fasta · 998636a0
  Ruben Vorderman authored 6 years ago
  
  998636a0
- rewrite argument · e3776779
  Ruben Vorderman authored 6 years ago
  
  e3776779
- proper file · 967fecde
  Ruben Vorderman authored 6 years ago
  
  967fecde
- change bamstats generate into file · 339666c0
  Ruben Vorderman authored 6 years ago
  
  339666c0
Dec 31, 2018
- genome dir should be a file · 94716802
  Ruben Vorderman authored 6 years ago
  
  94716802
Dec 24, 2018
- remove faulty validated fastq · e4d43896
  Ruben Vorderman authored 6 years ago
  
  e4d43896
- fix directory creation · 4b9f8f89
  Ruben Vorderman authored 6 years ago
  
  4b9f8f89
Dec 13, 2018
- Merge pull request #84 from biowdl/BIOWDL-164 · e2bd4122
  Ruben Vorderman authored 6 years ago
  
  Allow stringtie to skip novel transcripts
  Unverified
  
  e2bd4122
- add -e flag to stringtie · af00104c
  Cats authored 6 years ago
  
  af00104c
Dec 12, 2018
- Merge pull request #83 from biowdl/BIOWDL-164 · 5609afa4
  Ruben Vorderman authored 6 years ago
  
  add stringtie merge
  Unverified
  
  5609afa4
- missing backslash · c7f5f731
  Cats authored 6 years ago
  
  c7f5f731
- add stringtie merge · 6b1fdc4a
  Cats authored 6 years ago
  
  6b1fdc4a
Dec 07, 2018
- Merge pull request #82 from biowdl/SASC-844 · 753c2381
  Cats authored 6 years ago
  
  Adapt sane defaults for human analysis.
  Unverified
  
  753c2381
- Merge branch 'develop' into SASC-844 · f2103d9d
  Ruben Vorderman authored 6 years ago
  
  Unverified
  
  f2103d9d
- Merge pull request #81 from biowdl/fix_star_unmapped · cbdf7b2f
  Ruben Vorderman authored 6 years ago
  
  add outSAMunmapped to star
  Unverified
  
  cbdf7b2f
Dec 06, 2018
- more memory for htseq · b098f9d2
  Ruben Vorderman authored 6 years ago
  
  b098f9d2
- higher memory for htseqcount · 8899e8c4
  Ruben Vorderman authored 6 years ago
  
  8899e8c4
- saner defaults for star · 909fe66b
  Ruben Vorderman authored 6 years ago
  
  909fe66b
- Merge branch 'develop' into fix_star_unmapped · d71da870
  Cats authored 6 years ago
  
  Unverified
  
  d71da870
- add outSAMunmapped to star · 0d289573
  Cats authored 6 years ago
  
  0d289573
Dec 05, 2018
- Merge pull request #80 from biowdl/samtoolsMAPQ · 6caf6872
  Cats authored 6 years ago
  
  Add argument for filtering on MAPQ (alignment quality) for View task
  Unverified
  
  6caf6872
- Merge branch 'develop' into samtoolsMAPQ · a9dbe4ef
  Cats authored 6 years ago
  
  Unverified
  
  a9dbe4ef
Dec 04, 2018
- Add argument for filtering on MAPQ (alignment quality) for View task · 267d4e02
  Moustakas authored 6 years ago
  
  267d4e02
- Merge pull request #79 from biowdl/fix-fr-option-stringtie · 46f495de
  Ruben Vorderman authored 6 years ago
  
  Update stringtie.wdl
  Unverified
  
  46f495de
- Update stringtie.wdl · 439915b2
  Cats authored 6 years ago
  
  Unverified
  
  439915b2