Commits · 7e60cb682d4fac986cf9642705e6d356bae7e9d7 · biowdl / tasks

May 14, 2020
- Merge pull request #207 from biowdl/starIndex · 7e60cb68
  Cats authored 4 years ago
  
  Add Star index task
  7e60cb68
- Merge branch 'develop' into starIndex · ef20cff3
  Cats authored 4 years ago
  
  ef20cff3
May 11, 2020
- Merge pull request #217 from biowdl/BIOWDL-457 · 57edcae1
  Ruben Vorderman authored 4 years ago
  
  Add necessary options for RNA genotyping to haplotypecaller.
  57edcae1
- Add extra parameter_meta options for haplotypecaller · 6693dcfa
  Ruben Vorderman authored 4 years ago
  
  6693dcfa
- Record change in changelog · 73867fd5
  Ruben Vorderman authored 4 years ago
  
  73867fd5
May 08, 2020
- make minconfidence treshold optional · 5ca28720
  Ruben Vorderman authored 4 years ago
  
  5ca28720
- add options specific for RNA haplotype calling · 859b722f
  Ruben Vorderman authored 4 years ago
  
  859b722f
Apr 30, 2020
- Merge pull request #216 from biowdl/BIOWDL-453 · a94a1d4b
  Jasper authored 4 years ago
  
  BIOWDL-453: Fix quotations in samtools sort.
  a94a1d4b
- Update CHANGELOG.md · 8aafaabd
  Jasper authored 4 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  8aafaabd
Apr 28, 2020
- Fix CHANGELOG. · 169de2d4
  JasperBoom authored 4 years ago
  
  169de2d4
- Fix quotations in samtools sort. · d9265c31
  JasperBoom authored 4 years ago
  
  d9265c31
Apr 21, 2020
- Merge pull request #215 from biowdl/BIOWDL-450 · fd60df60
  Jasper authored 4 years ago
  
  BIOWDL-450: Update/add new tasks to samtools and picard.
  fd60df60
- Update CHANGELOG.md. · 78cb350a
  JasperBoom authored 4 years ago
  
  78cb350a
- Fix travis error. · c03c5562
  JasperBoom authored 4 years ago
  
  c03c5562
- Reinstate symlink. · a80da1d9
  JasperBoom authored 4 years ago
  
  a80da1d9
- Address comments. · 441890ee
  JasperBoom authored 4 years ago
  
  441890ee
- Add GC parameter. · f423e53e
  JasperBoom authored 4 years ago
  
  f423e53e
- Update documentation. · 90c0270d
  JasperBoom authored 4 years ago
  
  90c0270d
- Address GitHub comments. · e3890adf
  JasperBoom authored 4 years ago
  
  e3890adf
Apr 20, 2020
- Fix travis error. · 7627c314
  JasperBoom authored 4 years ago
  
  7627c314
- Add new tasks to samtools and picard. · 117bde45
  JasperBoom authored 4 years ago
  
  117bde45
Apr 15, 2020
- Merge pull request #214 from biowdl/BIOWDL-449 · afb07b5a
  Jasper authored 5 years ago
  
  BIOWDL-449: Remove dirname command from output folder creation step.
  afb07b5a
- Update brackets. · 92c7e923
  JasperBoom authored 5 years ago
  
  92c7e923
- Remove dirname command from output folder creation step. · 98494a21
  JasperBoom authored 5 years ago
  
  98494a21
Apr 14, 2020
- Merge pull request #213 from biowdl/BIOWDL-448 · 3cc32bc7
  Jasper authored 5 years ago
  
  BIOWDL-448: Isoseq3 requires more memory by default.
  3cc32bc7
- Update CHANGELOG. · c10cc771
  JasperBoom authored 5 years ago
  
  c10cc771
- Isoseq3 requires more memory by default. · ee708b8e
  JasperBoom authored 5 years ago
  
  ee708b8e
Apr 09, 2020
- Merge pull request #211 from biowdl/BIOWDL-420 · 4c9f70bd
  Jasper authored 5 years ago
  
  BIOWDL-420: Replace mv command with cp.
  4c9f70bd
Apr 08, 2020
- Merge branch 'develop' into BIOWDL-420 · ff613d41
  Jasper authored 5 years ago
  
  ff613d41
- Update WDL files. · 04f0edc2
  JasperBoom authored 5 years ago
  
  04f0edc2
- Merge pull request #210 from biowdl/addSmoove · b1717493
  Cedrick Agaser authored 5 years ago
  
  Add smoove
  b1717493
- update smoove.wdl · b4e37856
  cagaser authored 5 years ago
  
  b4e37856
- add meta info for time_minutes · e37162e4
  cagaser authored 5 years ago
  
  e37162e4
- Add baseline value. · 3d73a28b
  JasperBoom authored 5 years ago
  
  3d73a28b
- Update smoove.wdl · 8f1d98a4
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  8f1d98a4
- change task name to Call · c8d443ae
  cagaser authored 5 years ago
  
  c8d443ae
- add timeMinutes · 73f71840
  cagaser authored 5 years ago
  
  73f71840
- Update smoove.wdl · 5c250362
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  5c250362
- Update smoove.wdl · 7a2be2ed
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  7a2be2ed
- Update smoove.wdl · e3e0987b
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  e3e0987b