Commits · 6d46f0132002f16f7a9b896935c234a7b1a2b349 · biowdl / tasks

Oct 28, 2019
- add changes to log · 6d46f013
  Ruben Vorderman authored 5 years ago
  
  6d46f013
- fix samtools index · 60c48b64
  Ruben Vorderman authored 5 years ago
  
  60c48b64
- make sure directory is present · eaba2f12
  Ruben Vorderman authored 5 years ago
  
  eaba2f12
- update star · c4085415
  Ruben Vorderman authored 5 years ago
  
  c4085415
- syntax error · d87976bf
  Ruben Vorderman authored 5 years ago
  
  d87976bf
- hisat should deliver an indexed bam · 7a9d3cd4
  Ruben Vorderman authored 5 years ago
  
  7a9d3cd4
Oct 15, 2019
- Merge pull request #157 from biowdl/BIOWDL-327 · f4ed41c4
  JB authored 5 years ago
  
  BIOWDL-327: Update TranscriptClean to version 2.0.2
  Unverified
  
  f4ed41c4
- Update TranscriptClean to version 2.0.2 · 1e0fd640
  JB authored 5 years ago
  
  1e0fd640
Oct 09, 2019
- setting next version · 9b385071
  Ruben Vorderman authored 5 years ago
  
  9b385071
- update changelog version · e2559dbc
  Ruben Vorderman authored 5 years ago
  
  View commits for tag v2.0.0 v2.0.0
  
  e2559dbc
Oct 08, 2019
- Merge pull request #154 from biowdl/BIOWDL-339 · 9097b9ad
  Ruben Vorderman authored 5 years ago
  
  Update biowdl-input-converter image
  Unverified
  
  9097b9ad
- update biowdl-input-converter image · d07f5493
  Ruben Vorderman authored 5 years ago
  
  d07f5493
- update dockerimage for biowdl-input-converter · 395f9d96
  Ruben Vorderman authored 5 years ago
  
  395f9d96
Oct 07, 2019
- Merge pull request #153 from biowdl/BIOWDL-341 · 8f30f36d
  Ruben Vorderman authored 5 years ago
  
  fix small typo
  Unverified
  
  8f30f36d
- update submodule · 5ff1ba3d
  Ruben Vorderman authored 5 years ago
  
  5ff1ba3d
- fix small typo · 27dd3fda
  Ruben Vorderman authored 5 years ago
  
  27dd3fda
Oct 02, 2019
- Merge pull request #152 from biowdl/memory_strings · ee7d6e8c
  Ruben Vorderman authored 5 years ago
  
  Memory runtime attributes should be Strings not Ints
  Unverified
  
  ee7d6e8c
- update changelog · 730f2c97
  Cats authored 5 years ago
  
  730f2c97
- update changelog · 08e99496
  Cats authored 5 years ago
  
  08e99496
- memory Int -> String part 3 · 401808be
  Cats authored 5 years ago
  
  401808be
- Merge remote-tracking branch 'origin/develop' into memory_strings · 977b4af4
  Cats authored 5 years ago
  
  977b4af4
- memory Int -> String part 2 · 1a455271
  Cats authored 5 years ago
  
  1a455271
- Merge pull request #151 from biowdl/BIOWDL-336 · 18890859
  Ruben Vorderman authored 5 years ago
  
  Add biowdl-input-converter
  Unverified
  
  18890859
- change changelog · 533ad02d
  Ruben Vorderman authored 5 years ago
  
  533ad02d
- update changelog · 1b6557da
  Ruben Vorderman authored 5 years ago
  
  1b6557da
- debug tasks, add reasonable defaults for cromwell · c4ef5736
  Ruben Vorderman authored 5 years ago
  
  c4ef5736
Oct 01, 2019
- replace custom container with biocontainer · 76b878e3
  Ruben Vorderman authored 5 years ago
  
  76b878e3
- remove deprecated task · 49b91e5c
  Ruben Vorderman authored 5 years ago
  
  49b91e5c
- dockerImage configurable · 77a1866d
  Ruben Vorderman authored 5 years ago
  
  77a1866d
- add tasks for biowdl-input-converter · 68c5a0fa
  Ruben Vorderman authored 5 years ago
  
  68c5a0fa
- memory Int -> String part 1 · abd99d15
  Cats authored 5 years ago
  
  abd99d15
Sep 27, 2019
- Merge pull request #149 from biowdl/genotype_memory · d1d0d7ea
  Cats authored 5 years ago
  
  increase memoryMultiplier for genotypeGVCFs
  Unverified
  
  d1d0d7ea
- update changelog · d68769d5
  Cats authored 5 years ago
  
  d68769d5
- increase memorymultiplier for genotypeGVCFs · 7d713cda
  Cats authored 5 years ago
  
  7d713cda
Sep 26, 2019
- Merge pull request #148 from biowdl/BIOWDL-326 · 190c7fb6
  Cats authored 5 years ago
  
  BIOWDL-326: Add -k option to minimap2 mapping
  Unverified
  
  190c7fb6
- Update CHANGELOG.md · 8705c2d1
  Boom authored 5 years ago
  
  8705c2d1
- Add -k option to minimap2 mapping · cb929160
  Boom authored 5 years ago
  
  Based on minimap2 recommendations, the -k tag should be set to 14 for aligning directRNA Nanopore data
  cb929160
Sep 25, 2019
- Merge pull request #147 from biowdl/bwakit · 6af3ca35
  Cats authored 5 years ago
  
  Add bwakit task
  Unverified
  
  6af3ca35
- add parameter_meta for bwakit · 71b8929e
  Cats authored 5 years ago
  
  71b8929e
- update changelog · 20581d95
  Cats authored 5 years ago
  
  20581d95