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Commit d87976bf authored by Ruben Vorderman's avatar Ruben Vorderman
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syntax error

parent 7a9d3cd4
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......@@ -21,7 +21,7 @@ task Hisat2 {
}
# Select_first is needed, otherwise womtool validate fails.
String bamIndexPath = sub(select_first([outputBam]), "\.bam$", ".bai")
String bamIndexPath = sub(outputBam, "\.bam$", ".bai")
command {
set -e -o pipefail
......
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