Commits · 698f9a99093a2861c59c38283e71d0282eab59e1 · biowdl / tasks

Jun 26, 2019
- Merge branch 'BIOWDL-247' of https://github.com/biowdl/tasks into BIOWDL-247 · 698f9a99
  Ruben Vorderman authored 5 years ago
  
  698f9a99
- dockerimage for multiqc · 1197366f
  Ruben Vorderman authored 5 years ago
  
  1197366f
- make sure dirs exist · ecce2221
  Ruben Vorderman authored 5 years ago
  
  ecce2221
- add reference fasta index · 10e4b9eb
  Ruben Vorderman authored 5 years ago
  
  10e4b9eb
- remove structs · a13a5420
  Ruben Vorderman authored 5 years ago
  
  a13a5420
- add index file to vardict · 8df25f2c
  Ruben Vorderman authored 5 years ago
  
  8df25f2c
Jun 25, 2019
- remove structs · f4def78e
  Ruben Vorderman authored 5 years ago
  
  f4def78e
- add fasta index · a02ecad2
  Ruben Vorderman authored 5 years ago
  
  a02ecad2
- reStructuring. Get it? Struct! Hahahaha. · 88b51b9f
  Ruben Vorderman authored 5 years ago
  
  Honestly. So much overengineering. The output is a struct. But this causes problems down the line, so in the calling pipeline, the structs are immediately deconStructed in their member parts. What is the point???
  88b51b9f
- dockerImage somaticseq · 14dcd561
  Ruben Vorderman authored 5 years ago
  
  14dcd561
- add dockerImage · 24422854
  Ruben Vorderman authored 5 years ago
  
  24422854
- move to dockerImages · c2412151
  Ruben Vorderman authored 5 years ago
  
  c2412151
- fix input · ab3a4f9f
  Ruben Vorderman authored 5 years ago
  
  ab3a4f9f
- remove struct · fbb2945a
  Ruben Vorderman authored 5 years ago
  
  fbb2945a
- remove struct input · 87abd6b5
  Ruben Vorderman authored 5 years ago
  
  87abd6b5
Jun 24, 2019
- add preAdapterSummary · 0564fd09
  Ruben Vorderman authored 5 years ago
  
  0564fd09
- dockerImage for samtools · 8e8f9009
  Ruben Vorderman authored 5 years ago
  
  8e8f9009
- add dockerImages · 334705b6
  Ruben Vorderman authored 5 years ago
  
  334705b6
- Markduplicates dockerimage · fadb9017
  Ruben Vorderman authored 5 years ago
  
  fadb9017
- Merge branch 'BIOWDL-247' of https://github.com/biowdl/tasks into BIOWDL-247 · 70811600
  Ruben Vorderman authored 5 years ago
  
  70811600
- typo · 7af2606d
  Ruben Vorderman authored 5 years ago
  
  7af2606d
- docker image for cutadapt and fastqc · 1790b868
  Ruben Vorderman authored 5 years ago
  
  1790b868
- create dockerImage stuff · 4b51b2ff
  Ruben Vorderman authored 5 years ago
  
  4b51b2ff
- set core usage · 65c885b7
  Ruben Vorderman authored 5 years ago
  
  65c885b7
- add fastqsplitter · 8f3e73f4
  Ruben Vorderman authored 5 years ago
  
  8f3e73f4
Jun 20, 2019
- Merge pull request #115 from biowdl/BIOWDL-253 · 2d5d02f2
  Cats authored 5 years ago
  
  Add bowtie
  2d5d02f2
- small mods to multiqc.wdl · a478da08
  Ruben Vorderman authored 5 years ago
  
  a478da08
Jun 19, 2019
- Merge branch 'develop' into BIOWDL-253 · ed2cccfc
  Ruben Vorderman authored 5 years ago
  
  ed2cccfc
- always output to sam · 6f704053
  Ruben Vorderman authored 5 years ago
  
  6f704053
Jun 18, 2019
- fix bowtie running · 04bfb33a
  Ruben Vorderman authored 5 years ago
  
  04bfb33a
- fix id · c790691e
  Ruben Vorderman authored 5 years ago
  
  c790691e
- add default output tables · 40748f8f
  Ruben Vorderman authored 5 years ago
  
  40748f8f
- index solved · 83b6ec7b
  Ruben Vorderman authored 5 years ago
  
  83b6ec7b
Jun 17, 2019
- Merge pull request #113 from biowdl/small_fixes · 7e73f8f8
  Ruben Vorderman authored 5 years ago
  
  Small fixes
  7e73f8f8
- add sam RG stuff · 9d7eaa0d
  Ruben Vorderman authored 5 years ago
  
  9d7eaa0d
Jun 14, 2019
- remove obsolete task, fix typo · 23af9215
  Cats authored 5 years ago
  
  23af9215
Jun 13, 2019
- add bowtie · e451d5e3
  Ruben Vorderman authored 5 years ago
  
  e451d5e3
- fix star index · 67f2dce5
  Cats authored 5 years ago
  
  67f2dce5
- fix hisat2 index input · 51a995a1
  Cats authored 5 years ago
  
  51a995a1
Jun 12, 2019
- modify index input for hisat2 · 4ed83444
  Cats authored 5 years ago
  
  4ed83444