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Commit 10e4b9eb authored by Ruben Vorderman's avatar Ruben Vorderman
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add reference fasta index

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somaticseq.wdl
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......@@ -8,6 +8,7 @@ task ParallelPaired {
File? classifierIndel
String outputDir
File referenceFasta
File referenceFastaFai
File? inclusionRegion
File? exclusionRegion
File tumorBam
......@@ -82,6 +83,7 @@ task ParallelPairedTrain {
File truthIndel
String outputDir
File referenceFasta
File referenceFastaFai
File? inclusionRegion
File? exclusionRegion
File tumorBam
......@@ -155,6 +157,7 @@ task ParallelSingle {
File? classifierIndel
String outputDir
File referenceFasta
File referenceFastaFai
File? inclusionRegion
File? exclusionRegion
File bam
......@@ -214,6 +217,7 @@ task ParallelSingleTrain {
File truthIndel
String outputDir
File referenceFasta
File referenceFastaFai
File? inclusionRegion
File? exclusionRegion
File bam
......
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