Commits · 59366d5ebdea9e781dfea4113f83871aaf30244d · biowdl / tasks

Jun 18, 2020
- Update changelog for pbmm2 · 59366d5e
  van den Berg authored 4 years ago
  
  59366d5e
- Add pbmm2, the PacBio wrapper for minimap2 · 185ead0f
  van den Berg authored 4 years ago
  
  See https://github.com/PacificBiosciences/pbmm2 for details.
  185ead0f
Jun 17, 2020
- Merge pull request #224 from biowdl/chunkedscatter · c7e165f9
  Ruben Vorderman authored 4 years ago
  
  Update image for chunked scatter.
  Unverified
  
  c7e165f9
- Update parameter_meta · a0fccc3c
  Ruben Vorderman authored 4 years ago
  
  a0fccc3c
- Update changelog · aea930c6
  Ruben Vorderman authored 4 years ago
  
  aea930c6
- Update image and tasks for chunk scatter · 4402a95d
  Ruben Vorderman authored 4 years ago
  
  4402a95d
Jun 16, 2020
- Merge pull request #223 from biowdl/BIOWDL-471 · 3b583e41
  Ruben Vorderman authored 4 years ago
  
  Updated resource requirements for the RNA-seq pipeline.
  Unverified
  
  3b583e41
- Remove memoryGb from the input section · 5c9b7c83
  Ruben Vorderman authored 4 years ago
  
  5c9b7c83
- add javaxmx parameter_meta · e45b413f
  Ruben Vorderman authored 4 years ago
  
  e45b413f
- Merge branch 'BIOWDL-471' of https://github.com/biowdl/tasks into BIOWDL-471 · 95b19cd5
  Ruben Vorderman authored 4 years ago
  
  95b19cd5
- Update changelog · 88a1d405
  Ruben Vorderman authored 4 years ago
  
  88a1d405
- update gatk varianteval times · f3006d5a
  Ruben Vorderman authored 4 years ago
  
  f3006d5a
- Add scatter-regions to changelog · 5c1625e3
  Ruben Vorderman authored 4 years ago
  
  5c1625e3
- Merge branch 'develop' into BIOWDL-471 · c36bae77
  Ruben Vorderman authored 4 years ago
  
  Unverified
  
  c36bae77
- resource requirements for multiqc · 7db296e7
  Ruben Vorderman authored 4 years ago
  
  7db296e7
- Merge branch 'BIOWDL-471' of https://github.com/biowdl/tasks into BIOWDL-471 · 889b444d
  Ruben Vorderman authored 4 years ago
  
  889b444d
- Also read reference and dbsnpvcf as part of time estimate · edb371e3
  Ruben Vorderman authored 4 years ago
  
  edb371e3
- 300 minutes per G of input · a5cdc705
  Ruben Vorderman authored 4 years ago
  
  a5cdc705
Jun 15, 2020
- use the same prefix as the biopet-scatterregions tool · 5068af10
  Ruben Vorderman authored 4 years ago
  
  5068af10
- typo · 5f13c04f
  Ruben Vorderman authored 4 years ago
  
  5f13c04f
- Add scatter-regions task · 2cb77beb
  Ruben Vorderman authored 4 years ago
  
  2cb77beb
- Merge pull request #222 from biowdl/BIOWDL-474 · 4048bb82
  Jasper authored 4 years ago
  
  BIOWDL-474: Add new STAR options for processing rRNA depleted samples.
  Unverified
  
  4048bb82
- Fix command section now that new inputs are optional. · 0ad2ddbe
  JasperBoom authored 4 years ago
  
  0ad2ddbe
- Change new options to optional. · c8d87481
  JasperBoom authored 4 years ago
  
  c8d87481
Jun 12, 2020
- Update CHANGELOG. · 1d784bfd
  JasperBoom authored 4 years ago
  
  1d784bfd
- Merge branch 'develop' of https://github.com/biowdl/tasks into BIOWDL-474 · 8a48751c
  JasperBoom authored 4 years ago
  
  8a48751c
- Add new STAR options. · 92c8725f
  JasperBoom authored 4 years ago
  
  92c8725f
- Merge pull request #221 from biowdl/BIOWDL-472 · fe74bead
  Jasper authored 4 years ago
  
  BIOWDL-472: Update minimumIdentity to correct type and default.
  Unverified
  
  fe74bead
- Trigger travis test. · 9faafc1d
  JasperBoom authored 4 years ago
  
  9faafc1d
Jun 11, 2020
- Update minimumIdentity to correct type and default. · e323a23d
  JasperBoom authored 4 years ago
  
  e323a23d
Jun 10, 2020
- Fix error in star · 8aa27236
  Ruben Vorderman authored 4 years ago
  
  8aa27236
- Fix spelling error in parameter_meta of common.wdl · d15fedbf
  JasperBoom authored 4 years ago
  
  d15fedbf
Jun 09, 2020
- Merge remote-tracking branch 'origin' into BIOWDL-471 · 7abaf7ad
  Ruben Vorderman authored 4 years ago
  
  7abaf7ad
- allow for very large scattersizes · 4f31b5fb
  Ruben Vorderman authored 4 years ago
  
  4f31b5fb
- Merge pull request #220 from biowdl/BIOWDL-469 · 2ffa3586
  Ruben Vorderman authored 4 years ago
  
  Add bcftools stats and GATK VariantEval
  Unverified
  
  2ffa3586
Jun 08, 2020
- Remove empty line · a967bf6b
  Ruben Vorderman authored 4 years ago
  
  a967bf6b
- complete parameter_meta for bcf tools · f2c1d5ba
  Ruben Vorderman authored 4 years ago
  
  f2c1d5ba
Jun 05, 2020
- update changelog · 00e1180c
  Ruben Vorderman authored 4 years ago
  
  00e1180c
- fix stats task · 2eca5b51
  Ruben Vorderman authored 4 years ago
  
  2eca5b51
- fix typo and use newer version of GATK · 3eccb5b7
  Ruben Vorderman authored 4 years ago
  
  3eccb5b7