Commits · 408f06c6ed8cf2780f28a28cdc802b02b432f0d9 · biowdl / tasks

May 19, 2020
- Update changelog with changes and to a newer version · 408f06c6
  Ruben Vorderman authored 4 years ago
  
  408f06c6
- Merge origin/develop into BIOWDL-464 · b0b19669
  Ruben Vorderman authored 4 years ago
  
  b0b19669
- fix missing paramter_meta · f8198099
  Cats authored 4 years ago
  
  f8198099
- Merge pull request #218 from biowdl/BIOWDL-465 · dc1e96bb
  Jasper authored 4 years ago
  
  BIOWDL-465: Make a number of outputs optional in Picard.
  Unverified
  
  dc1e96bb
- Update picard.wdl · 48aef36c
  Jasper authored 4 years ago
  
  Co-authored-by: DavyCats <davycats.dc@gmail.com>
  Unverified
  
  48aef36c
- Update CHANGELOG. · ab21de84
  JasperBoom authored 4 years ago
  
  ab21de84
- Set all outputs to optional. · 28cb8e8d
  JasperBoom authored 4 years ago
  
  28cb8e8d
- Update CHANGELOG text. · 42c6d473
  JasperBoom authored 4 years ago
  
  42c6d473
- Make a number of outputs optional in Picard. · dbe93a9e
  JasperBoom authored 4 years ago
  
  dbe93a9e
May 18, 2020
- repair hisat2 · efd99dda
  Ruben Vorderman authored 4 years ago
  
  efd99dda
- add allFiles output to gffcompare · f5f38a7b
  Ruben Vorderman authored 4 years ago
  
  f5f38a7b
- fix missing parameter_meta · e055553d
  Cats authored 4 years ago
  
  e055553d
- make pdf files optional · 17cdbd13
  Ruben Vorderman authored 4 years ago
  
  17cdbd13
- hisat2.wdl · cf652ee3
  Ruben Vorderman authored 4 years ago
  
  cf652ee3
- add summary file to hisat2 task · e1806e2e
  Ruben Vorderman authored 4 years ago
  
  e1806e2e
- add reportfile output to star · 44a372ed
  Ruben Vorderman authored 4 years ago
  
  44a372ed
- fix parameter_meta' · d8271dc1
  Ruben Vorderman authored 4 years ago
  
  d8271dc1
- Merge pull request #212 from biowdl/time_minutes · 2ad7973b
  Cats authored 4 years ago
  
  Add time_minutes runtime_attribute
  Unverified
  
  2ad7973b
- MultiQC should work directly with report files · c3dbda9b
  Ruben Vorderman authored 4 years ago
  
  c3dbda9b
May 15, 2020
- fix variable used for time_minutes estimation in bwa · c535d259
  Cats authored 4 years ago
  
  c535d259
May 14, 2020
- adress comments · fa1901c4
  Cats authored 4 years ago
  
  fa1901c4
- Merge remote-tracking branch 'origin' into time_minutes · 160bd925
  Cats authored 4 years ago
  
  160bd925
- Merge pull request #207 from biowdl/starIndex · 7e60cb68
  Cats authored 4 years ago
  
  Add Star index task
  Unverified
  
  7e60cb68
- Merge branch 'develop' into starIndex · ef20cff3
  Cats authored 4 years ago
  
  Unverified
  
  ef20cff3
- update changelog · a4319c3e
  Cats authored 4 years ago
  
  a4319c3e
- Merge remote-tracking branch 'origin' into time_minutes · 8c2cb732
  Cats authored 4 years ago
  
  8c2cb732
- adjust time_minuteso · e39ea045
  Cats authored 4 years ago
  
  e39ea045
May 13, 2020
- time_minutes · 3b8ca6a8
  Cats authored 4 years ago
  
  3b8ca6a8
May 11, 2020
- Merge pull request #217 from biowdl/BIOWDL-457 · 57edcae1
  Ruben Vorderman authored 4 years ago
  
  Add necessary options for RNA genotyping to haplotypecaller.
  Unverified
  
  57edcae1
- Add extra parameter_meta options for haplotypecaller · 6693dcfa
  Ruben Vorderman authored 4 years ago
  
  6693dcfa
- Record change in changelog · 73867fd5
  Ruben Vorderman authored 4 years ago
  
  73867fd5
- time_minutes · 6b8a7551
  Cats authored 4 years ago
  
  6b8a7551
May 08, 2020
- make minconfidence treshold optional · 5ca28720
  Ruben Vorderman authored 4 years ago
  
  5ca28720
- add options specific for RNA haplotype calling · 859b722f
  Ruben Vorderman authored 4 years ago
  
  859b722f
May 07, 2020
- fix task order samtools and remove duplicate task · ac71e415
  Cats authored 4 years ago
  
  ac71e415
- fix samtools sort · 1a90d56f
  Cats authored 4 years ago
  
  1a90d56f
May 06, 2020
- Merge remote-tracking branch 'origin/develop' into time_minutes · a16774eb
  Cats authored 4 years ago
  
  a16774eb
- various changes · c33f00ed
  Cats authored 4 years ago
  
  c33f00ed
- minor adjustments · 515df50d
  Cats authored 4 years ago
  
  515df50d
- time_minutes! · 84ba1ef7
  Cats authored 4 years ago
  
  84ba1ef7