Commits · 2fe5710c5ba5a8968cf0e9c514939307287b7e04 · biowdl / tasks

Oct 31, 2019
- add parameter_meta to fastqc · 2fe5710c
  Cats authored 5 years ago
  
  2fe5710c
Oct 30, 2019
- add parameter_meta to cutadapt · aea3dc7b
  Cats authored 5 years ago
  
  aea3dc7b
Oct 02, 2019
- memory Int -> String part 2 · 1a455271
  Cats authored 5 years ago
  
  1a455271
Sep 16, 2019
- Fix highly overestimated memory requirement. · 4886c4f2
  Ruben Vorderman authored 5 years ago
  
  Unverified
  
  4886c4f2
Aug 16, 2019
- add comment · 61b586f4
  Ruben Vorderman authored 5 years ago
  
  61b586f4
- simplify cutadapt interface · 8e3e8a5f
  Ruben Vorderman authored 5 years ago
  
  8e3e8a5f
Aug 15, 2019
- remove default adapter · a5dc8e68
  Ruben Vorderman authored 5 years ago
  
  a5dc8e68
Jul 19, 2019
- fix issues with read2output · eb96a694
  Ruben Vorderman authored 5 years ago
  
  eb96a694
- simpler report semantics · dea3d7a7
  Ruben Vorderman authored 5 years ago
  
  dea3d7a7
- fix broken flag · 1c3e6454
  Ruben Vorderman authored 5 years ago
  
  1c3e6454
- use output compression level 1 for cutadapt · f0b59be2
  Ruben Vorderman authored 5 years ago
  
  f0b59be2
Jul 09, 2019
- fix bug · b819c30c
  Ruben Vorderman authored 5 years ago
  
  b819c30c
Jul 08, 2019
- small fixes · 3ec3f6b1
  Ruben Vorderman authored 5 years ago
  
  3ec3f6b1
Jun 24, 2019
- docker image for cutadapt and fastqc · 1790b868
  Ruben Vorderman authored 5 years ago
  
  1790b868
Jun 12, 2019
- memory adjustments · b7e9ca35
  Cats authored 5 years ago
  
  b7e9ca35
May 09, 2019
- fix logic and formatting · 66c50d9b
  Ruben Vorderman authored 5 years ago
  
  66c50d9b
- correctify · 4f983c44
  Ruben Vorderman authored 5 years ago
  
  4f983c44
- newer version of cutadapt · 0cf0c068
  Ruben Vorderman authored 5 years ago
  
  0cf0c068
- allow for single adapter and contaminations input in cutadapt · d993500b
  Ruben Vorderman authored 5 years ago
  
  d993500b
Feb 22, 2019
- some clean up · 4da285de
  Cats authored 6 years ago
  
  4da285de
Feb 07, 2019
- add docker for extract adapters, catadapt and fastqc · 9e8bf82a
  Cats authored 6 years ago
  
  9e8bf82a
Feb 01, 2019
- remove import from simple task · 5e23c34a
  Ruben Vorderman authored 6 years ago
  
  5e23c34a
Oct 16, 2018
- memory adjustments · 9c978d3a
  Cats authored 6 years ago
  
  9c978d3a
Sep 10, 2018
- Switch to strucs · d557d942
  ffinfo authored 6 years ago
  
  d557d942
Aug 20, 2018
- change camelization · 0bf8c70f
  Ruben Vorderman authored 6 years ago
  
  0bf8c70f
Aug 15, 2018
- iFixed R2 arg · 9b7c5ff9
  ffinfo authored 6 years ago
  
  9b7c5ff9
Jul 24, 2018
- turn optional with default into mandatory with default · 6425926f
  Cats authored 6 years ago
  
  6425926f
Jul 23, 2018
- added stylish newlines · 3d8b32b2
  Ruben Vorderman authored 6 years ago
  
  3d8b32b2
- cutadapt to 1.0 · e286ef66
  Ruben Vorderman authored 6 years ago
  
  e286ef66
Jul 16, 2018
- add picard metrics tools · e2d48b9d
  Cats authored 6 years ago
  
  e2d48b9d
Jun 14, 2018
- set minimumlength to 1 by default · 5ddecde6
  Ruben Vorderman authored 6 years ago
  
  5ddecde6
Feb 22, 2018
- solved memory issues · f8555ebe
  Ruben Vorderman authored 7 years ago
  
  f8555ebe
Feb 08, 2018
- use proper mkdir and dirname commands · e63040a8
  Ruben Vorderman authored 7 years ago
  
  e63040a8
- cutadapt only accepts arrays with at least one item for adapters · 4b8cd7a8
  Ruben Vorderman authored 7 years ago
  
  4b8cd7a8
Jan 30, 2018
- add memory param · 52c8fe03
  Ruben Vorderman authored 7 years ago
  
  52c8fe03
Jan 29, 2018
- allow capturing of report · 767bc08a
  Ruben Vorderman authored 7 years ago
  
  767bc08a
- add mkdir statement · 4f383528
  Ruben Vorderman authored 7 years ago
  
  4f383528
- add preCommand · 9f1537d0
  Ruben Vorderman authored 7 years ago
  
  9f1537d0
- work with adapterlist · 6cccf353
  Ruben Vorderman authored 7 years ago
  
  6cccf353
Jan 19, 2018
- some debugging · fa4a6785
  Ruben Vorderman authored 7 years ago
  
  fa4a6785