Commits · 2f091247428716a36da8bacd840d71cafcc5dfb7 · biowdl / tasks

Jan 23, 2020
- update changelog · 2f091247
  Ruben Vorderman authored 5 years ago
  
  2f091247
- set pipefail to prevent errors in bed files · 005a9d6e
  Ruben Vorderman authored 5 years ago
  
  005a9d6e
Jan 21, 2020
- Merge pull request #172 from biowdl/BIOWDL-377 · dda26fbd
  Ruben Vorderman authored 5 years ago
  
  Add bedtools tasks and add ploidity to haplotypecaller for gender aware variant-calling.
  dda26fbd
- Merge branch 'BIOWDL-377' of https://github.com/biowdl/tasks into BIOWDL-377 · c371d9b5
  Ruben Vorderman authored 5 years ago
  
  c371d9b5
- Make bedFiles obligatory · e95ba4ab
  Ruben Vorderman authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  e95ba4ab
- fix indentation · 7d4af040
  Ruben Vorderman authored 5 years ago
  
  7d4af040
- update submodules · 0a2b6992
  Ruben Vorderman authored 5 years ago
  
  0a2b6992
- add changes to changelog · 9fefd1f2
  Ruben Vorderman authored 5 years ago
  
  9fefd1f2
- Merge remote-tracking branch 'remotes/origin/develop' into BIOWDL-377 · 94ec2034
  Ruben Vorderman authored 5 years ago
  
  94ec2034
Jan 17, 2020
- Merge pull request #170 from biowdl/BIOWDL-380 · f3b26fdb
  Jasper Boom authored 5 years ago
  
  BIOWDL-380: Update centrifuge task.
  f3b26fdb
- Fix CI error. · 3d752965
  JasperBoom authored 5 years ago
  
  3d752965
- Rename cores to threads. · da98e664
  JasperBoom authored 5 years ago
  
  da98e664
- Merge branch 'BIOWDL-380' of https://github.com/biowdl/tasks into BIOWDL-380 · 048273ee
  JasperBoom authored 5 years ago
  
  048273ee
- Update LINCENSE date. · 948e3ca0
  JasperBoom authored 5 years ago
  
  948e3ca0
- Update centrifuge.wdl · e707ed95
  Jasper Boom authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  e707ed95
- Update CHANGELOG. · fafd3372
  JasperBoom authored 5 years ago
  
  fafd3372
Jan 16, 2020
- Update scripts submodule. · 25c831fe
  JasperBoom authored 5 years ago
  
  25c831fe
- Reformat parameter_meta. · 9de764c4
  JasperBoom authored 5 years ago
  
  9de764c4
- Merge branch 'develop' of https://github.com/biowdl/tasks into BIOWDL-380 · 589712ab
  JasperBoom authored 5 years ago
  
  589712ab
- Merge pull request #169 from biowdl/parameter_meta · 7f1545f4
  Cats authored 5 years ago
  
  add parameter_meta
  7f1545f4
- typos · 0ffaa3a3
  Cats authored 5 years ago
  
  0ffaa3a3
- update scripts · bd92d1f4
  Cats authored 5 years ago
  
  bd92d1f4
- update scripts · 49a4e493
  Cats authored 5 years ago
  
  49a4e493
- Merge remote-tracking branch 'origin/develop' into parameter_meta · 587c4451
  Cats authored 5 years ago
  
  587c4451
- fix linting error · 8f41d5d5
  Cats authored 5 years ago
  
  8f41d5d5
- add parameter_meta to hisat2 and star · cf5c864d
  Cats authored 5 years ago
  
  cf5c864d
- add parameter_meta to gffcompare and gff read · 21165c7b
  Cats authored 5 years ago
  
  21165c7b
Jan 15, 2020
- add parameter_meta to CPAT · baeef514
  Cats authored 5 years ago
  
  baeef514
- update parameter_meta of minimap2, talon and transcriptclean · a78426b8
  Cats authored 5 years ago
  
  a78426b8
- add parameter_meta to BWA · febf092d
  Cats authored 5 years ago
  
  febf092d
Jan 14, 2020
- Remove trailing spaces after \. · 4255eca7
  JasperBoom authored 5 years ago
  
  4255eca7
- Update parameter_meta and fix womtool validate error. · d17d5ca2
  JasperBoom authored 5 years ago
  
  d17d5ca2
- Add new centrifuge tasks. · 3fc31f09
  JasperBoom authored 5 years ago
  
  3fc31f09
- add parameter_meta to SortVcf · ebbf979a
  Cats authored 5 years ago
  
  ebbf979a
Jan 13, 2020
- add parameter_meta to chunked-scatter · f66d0644
  Cats authored 5 years ago
  
  f66d0644
- add parameter_meta to vardict · 85717efe
  Cats authored 5 years ago
  
  85717efe
- add parameter_meta to manta, strelka and somaticseq · 63022ee4
  Cats authored 5 years ago
  
  63022ee4
Jan 10, 2020
- add parameter_meta to various gatk tasks · d554c4ba
  Cats authored 5 years ago
  
  d554c4ba
- add parameter_meta to biowdl input converter and YamltoJson · 8495de61
  Cats authored 5 years ago
  
  8495de61
- add parameter_meta to bowtie · f37b2874
  Cats authored 5 years ago
  
  f37b2874