Commits · 1db21ed6d827ace5889f37bd12d9e3fa4bea869f · biowdl / tasks

Jun 05, 2020
- Add fastqc change to changelog · 1db21ed6
  Ruben Vorderman authored 4 years ago
  
  1db21ed6
- Add missing \ · 56437e74
  Ruben Vorderman authored 4 years ago
  
  56437e74
- Skip the Perl wrapper and talk to fastq jar directly · a8c2b90a
  Ruben Vorderman authored 4 years ago
  
  a8c2b90a
- try to fix memory · bf614579
  Ruben Vorderman authored 4 years ago
  
  bf614579
Jun 04, 2020
- update star resource requirement · 6d737097
  Ruben Vorderman authored 4 years ago
  
  6d737097
- Tune memory and time requirements for RNA seq · 3261563d
  Ruben Vorderman authored 4 years ago
  
  3261563d
- Add comment · 898e02ee
  Ruben Vorderman authored 4 years ago
  
  898e02ee
- higher margin for rnaseqmetrics · 3605b18e
  Ruben Vorderman authored 4 years ago
  
  3605b18e
Jun 02, 2020
- Take into account index size for star alignment time requirement · b3a80c84
  Ruben Vorderman authored 4 years ago
  
  b3a80c84
May 20, 2020
- add missing parameter_meta · 0211661c
  Cats authored 4 years ago
  
  0211661c
- Merge pull request #219 from biowdl/BIOWDL-464 · d524e6fd
  Ruben Vorderman authored 4 years ago
  
  Fixes for proper MultiQC integration
  Unverified
  
  d524e6fd
- add gffcompare output · a879f1c7
  Ruben Vorderman authored 4 years ago
  
  a879f1c7
May 19, 2020
- Add summaryFilePath parameter_meta · 8aa9d7ea
  Ruben Vorderman authored 4 years ago
  
  8aa9d7ea
- Parameter meta for multiqc updated. Make sure data dir output is always zipped by default. · 6fbe1b7f
  Ruben Vorderman authored 4 years ago
  
  6fbe1b7f
- Merge branch 'BIOWDL-464' of https://github.com/biowdl/tasks into BIOWDL-464 · ce22935b
  Ruben Vorderman authored 4 years ago
  
  ce22935b
- cleanup multiqc. Add comments on how it works · d3832132
  Ruben Vorderman authored 4 years ago
  
  d3832132
- Update changelog with changes and to a newer version · 408f06c6
  Ruben Vorderman authored 4 years ago
  
  408f06c6
- Merge origin/develop into BIOWDL-464 · b0b19669
  Ruben Vorderman authored 4 years ago
  
  b0b19669
- fix missing paramter_meta · f8198099
  Cats authored 4 years ago
  
  f8198099
- Merge pull request #218 from biowdl/BIOWDL-465 · dc1e96bb
  Jasper authored 4 years ago
  
  BIOWDL-465: Make a number of outputs optional in Picard.
  Unverified
  
  dc1e96bb
- Update picard.wdl · 48aef36c
  Jasper authored 4 years ago
  
  Co-authored-by: DavyCats <davycats.dc@gmail.com>
  Unverified
  
  48aef36c
- Update CHANGELOG. · ab21de84
  JasperBoom authored 4 years ago
  
  ab21de84
- Set all outputs to optional. · 28cb8e8d
  JasperBoom authored 4 years ago
  
  28cb8e8d
- Update CHANGELOG text. · 42c6d473
  JasperBoom authored 4 years ago
  
  42c6d473
- Make a number of outputs optional in Picard. · dbe93a9e
  JasperBoom authored 4 years ago
  
  dbe93a9e
May 18, 2020
- repair hisat2 · efd99dda
  Ruben Vorderman authored 4 years ago
  
  efd99dda
- add allFiles output to gffcompare · f5f38a7b
  Ruben Vorderman authored 4 years ago
  
  f5f38a7b
- fix missing parameter_meta · e055553d
  Cats authored 4 years ago
  
  e055553d
- make pdf files optional · 17cdbd13
  Ruben Vorderman authored 4 years ago
  
  17cdbd13
- hisat2.wdl · cf652ee3
  Ruben Vorderman authored 4 years ago
  
  cf652ee3
- add summary file to hisat2 task · e1806e2e
  Ruben Vorderman authored 4 years ago
  
  e1806e2e
- add reportfile output to star · 44a372ed
  Ruben Vorderman authored 4 years ago
  
  44a372ed
- fix parameter_meta' · d8271dc1
  Ruben Vorderman authored 4 years ago
  
  d8271dc1
- Merge pull request #212 from biowdl/time_minutes · 2ad7973b
  Cats authored 4 years ago
  
  Add time_minutes runtime_attribute
  Unverified
  
  2ad7973b
- MultiQC should work directly with report files · c3dbda9b
  Ruben Vorderman authored 4 years ago
  
  c3dbda9b
May 15, 2020
- fix variable used for time_minutes estimation in bwa · c535d259
  Cats authored 4 years ago
  
  c535d259
May 14, 2020
- adress comments · fa1901c4
  Cats authored 4 years ago
  
  fa1901c4
- Merge remote-tracking branch 'origin' into time_minutes · 160bd925
  Cats authored 4 years ago
  
  160bd925
- Merge pull request #207 from biowdl/starIndex · 7e60cb68
  Cats authored 4 years ago
  
  Add Star index task
  Unverified
  
  7e60cb68
- Merge branch 'develop' into starIndex · ef20cff3
  Cats authored 4 years ago
  
  Unverified
  
  ef20cff3