Commits · 1a45527118f22e6c255d4f8d88102f86838cc0c2 · biowdl / tasks

Oct 02, 2019
- memory Int -> String part 2 · 1a455271
  Cats authored 5 years ago
  
  1a455271
Sep 11, 2019
- processed review of Davy. · f037c38a
  Mei authored 5 years ago
  
  f037c38a
- support name based sorting in smallRNA pipeline · 33f53d10
  Mei authored 5 years ago
  
  33f53d10
Jul 09, 2019
- some changes · 60ebaba0
  Ruben Vorderman authored 5 years ago
  
  60ebaba0
Jul 08, 2019
- small fixes · 3ec3f6b1
  Ruben Vorderman authored 5 years ago
  
  3ec3f6b1
Jul 03, 2019
- fix · 68061dfd
  Ruben Vorderman authored 5 years ago
  
  68061dfd
- fix output bam · 0c655aeb
  Ruben Vorderman authored 5 years ago
  
  0c655aeb
- valid wdl · b025aec9
  Ruben Vorderman authored 5 years ago
  
  b025aec9
- fix samtools · a5010d88
  Ruben Vorderman authored 5 years ago
  
  a5010d88
- improve indexing · dde60f45
  Ruben Vorderman authored 5 years ago
  
  dde60f45
Jul 02, 2019
- universal indexing · a558d5bf
  Ruben Vorderman authored 5 years ago
  
  a558d5bf
Jun 26, 2019
- make sure dirs exist · ecce2221
  Ruben Vorderman authored 5 years ago
  
  ecce2221
Jun 24, 2019
- dockerImage for samtools · 8e8f9009
  Ruben Vorderman authored 5 years ago
  
  8e8f9009
Jun 04, 2019
- destroy another struct · 2afe2c05
  Ruben Vorderman authored 5 years ago
  
  2afe2c05
- fix tabix · 13ce0fb1
  Ruben Vorderman authored 5 years ago
  
  13ce0fb1
- fix tabix · 9541e660
  Ruben Vorderman authored 5 years ago
  
  9541e660
- rewrite tabix · d1229d3e
  Ruben Vorderman authored 5 years ago
  
  d1229d3e
- index in the merge step · 7f939c34
  Ruben Vorderman authored 5 years ago
  
  7f939c34
- some additions · 77cff7b2
  Ruben Vorderman authored 5 years ago
  
  77cff7b2
- make samtools suitable for containers · 76f190c8
  Ruben Vorderman authored 5 years ago
  
  76f190c8
Apr 04, 2019
- small fixes · 4687394a
  Cats authored 6 years ago
  
  4687394a
Feb 22, 2019
- remove parameter_meta entry for removed input · 96ec7dc1
  Cats authored 6 years ago
  
  96ec7dc1
- some clean up · 4da285de
  Cats authored 6 years ago
  
  4da285de
Feb 20, 2019
- tabix container for bgzip · 810228f4
  Ruben Vorderman authored 6 years ago
  
  810228f4
- tabix uses its own container · d6beeeba
  Ruben Vorderman authored 6 years ago
  
  d6beeeba
Feb 19, 2019
- add tags to all samtools stuff · 0e84089e
  Ruben Vorderman authored 6 years ago
  
  0e84089e
Jan 21, 2019
- add docker to other samtools tasks · c2935cd0
  Cats authored 6 years ago
  
  c2935cd0
- add docker runtime for star and samtools index · 7cdc1c77
  Cats authored 6 years ago
  
  7cdc1c77
Dec 04, 2018
- Add argument for filtering on MAPQ (alignment quality) for View task · 267d4e02
  Moustakas authored 6 years ago
  
  267d4e02
Sep 17, 2018
- Make bamIndexPath required · 4230206a
  Peter van 't Hof authored 6 years ago
  
  4230206a
Sep 13, 2018
- WIP · 26ee393b
  ffinfo authored 6 years ago
  
  26ee393b
- Dynamic index searching · 85898c4d
  ffinfo authored 6 years ago
  
  85898c4d
- Fixed names · 783783a9
  Peter van 't Hof authored 6 years ago
  
  783783a9
Sep 10, 2018
- Switch to strucs · d557d942
  ffinfo authored 6 years ago
  
  d557d942
Aug 08, 2018
- various fixes · b71a1496
  Cats authored 6 years ago
  
  b71a1496
Aug 02, 2018
- fix somatic tasks and add supporting tasks · 0dc72531
  Cats authored 6 years ago
  
  0dc72531
Jul 24, 2018
- turn optional with default into mandatory with default · 6425926f
  Cats authored 6 years ago
  
  6425926f
Jul 23, 2018
- added stylish newlines · 3d8b32b2
  Ruben Vorderman authored 6 years ago
  
  3d8b32b2
- style fixes · 2b903b2b
  Ruben Vorderman authored 6 years ago
  
  2b903b2b
- samtools to 1.0 · 3c7c7a38
  Ruben Vorderman authored 6 years ago
  
  3c7c7a38