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    • Cats's avatar
      typos · 0ffaa3a3
      Cats authored
      0ffaa3a3
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    • António Paulo's avatar
      Update default memory values and CombineVariants to run in Shark · 621c4862
      António Paulo authored 
        Virtual memory usage in Shark Cluster at LUMC is considerably more than in local testing.
  CombineVariants command had to be updated because "-o pipefail" is not a recognized option in Shark computing nodes. Also, because the cromwell config uses "sh" to run the scripts, an unpredicted syntax error was occurring. As a workaround the command to be run is now written into a file which is then run.
      621c4862
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