fix FilterMutectCalls not creating expected output folder

f3888236 · António Paulo · ed6d2cf2 · f3888236
Commit f3888236 authored 5 years ago by António Paulo
--- a/gatk.wdl
+++ b/gatk.wdl
@@ -442,6 +442,7 @@ task FilterMutectCalls {

    command {
        set -e
+        mkdir -p $(dirname ~{outputVcf})
        gatk --java-options -Xmx~{memory}G \
        FilterMutectCalls \
        -R ~{referenceFasta} \