Commits · 0ed76c14ffe5ab4779ed42f924fbcab1acdda266 · biowdl / tasks

May 01, 2023
- Stable version in changelog · 0ed76c14
  Ruben Vorderman authored 1 year ago
  
  View commits for tag v5.2.0 v5.2.0
  
  0ed76c14
- Merge pull request #320 from biowdl/BIOWDL-605 · 0031eec5
  Ruben Vorderman authored 1 year ago
  
  Update FastQC and cutadapt
  0031eec5
Apr 28, 2023
- Update classpath · 5cf560b5
  Ruben Vorderman authored 1 year ago
  
  5cf560b5
- Update cutadapt and FastQC · 64aa91e7
  Ruben Vorderman authored 1 year ago
  
  64aa91e7
- setting next version · 9394a3e2
  Ruben Vorderman authored 1 year ago
  
  9394a3e2
- Set stable version · 1a57c2ed
  Ruben Vorderman authored 1 year ago
  
  1a57c2ed
Mar 17, 2023
- Merge pull request #318 from biowdl/shallow_mode · c2b179a9
  Cats authored 1 year ago
  
  Add inputs for hfmtool's purple "shallow mode"
  View commits for tag v5.1.0 v5.1.0
  
  c2b179a9
Mar 10, 2023
- update parameter_meta and changelog · 36a4575e
  Cats authored 2 years ago
  
  36a4575e
Mar 03, 2023
- add purple options needed for shallow mode · 5d35105b
  Cats authored 2 years ago
  
  5d35105b
- add option to enable/disable ploy-g trimming to fastp task · ab54bb58
  Cats authored 2 years ago
  
  ab54bb58
Feb 23, 2023
- Merge pull request #317 from biowdl/fastp_update · d2f3c9e3
  Cats authored 2 years ago
  
  add some options to disable filters in fastp
  d2f3c9e3
- add some options to disable filters in fastp · eba9ad4c
  Cats authored 2 years ago
  
  eba9ad4c
Feb 17, 2023
- Merge pull request #316 from biowdl/fastp · 9e946c70
  Cats authored 2 years ago
  
  Add fastp and picard CollectInsertSizeMetrics
  9e946c70
- Merge remote-tracking branch 'origin/develop' into fastp · 19652d86
  Cats authored 2 years ago
  
  19652d86
- Merge pull request #312 from biowdl/somaticSv · 07c44ca7
  Cats authored 2 years ago
  
  add various tasks for somatic SV calling
  07c44ca7
Feb 16, 2023
- update scripts · 7b9e0765
  Cats authored 2 years ago
  
  7b9e0765
- update changelog · 66942862
  Cats authored 2 years ago
  
  66942862
- Merge remote-tracking branch 'origin/develop' into somaticSv · 2761d302
  Cats authored 2 years ago
  
  2761d302
- update scripts · ad97efa0
  Cats authored 2 years ago
  
  ad97efa0
- update changelog · c3f246f2
  Cats authored 2 years ago
  
  c3f246f2
- Merge remote-tracking branch 'origin/develop' into fastp · 5a4ceb34
  Cats authored 2 years ago
  
  5a4ceb34
Feb 10, 2023
- Merge pull request #315 from biowdl/BIOWDL-604 · bfabd797
  Ruben Vorderman authored 2 years ago
  
  Allow a custom separator char in tagUmi
  bfabd797
- Add missing interpunction · b3c9204b
  Ruben Vorderman authored 2 years ago
  
  b3c9204b
- Update changelog with separatorChar · 84a8781c
  Ruben Vorderman authored 2 years ago
  
  84a8781c
- Allow a custom separator char · 3961ab4e
  Ruben Vorderman authored 2 years ago
  
  3961ab4e
Feb 06, 2023
- add samples option to bcftools view · d320b3c7
  Cats authored 2 years ago
  
  d320b3c7
Feb 01, 2023
- fix gridss somatic filter output paths? · b17076a6
  Cats authored 2 years ago
  
  b17076a6
- fix output paths gridss somatic filter · 42796e37
  Cats authored 2 years ago
  
  42796e37
Jan 31, 2023
- add missing fasta index input to gridss GeneratePonBedpe · 48340415
  Cats authored 2 years ago
  
  48340415
- give delly more time, specify normal ordinal in gridss GeneratePonBedpe command · dd9ea3db
  Cats authored 2 years ago
  
  dd9ea3db
Jan 27, 2023
- update parameter_meta · 71193e8d
  Cats authored 2 years ago
  
  71193e8d
- add index to delly call inputs as well · 9af22058
  Cats authored 2 years ago
  
  9af22058
- add bcf index input for delly somatic filter · 1bf7725d
  Cats authored 2 years ago
  
  1bf7725d
- increase time for manta, add index to delly outputs · ee0b1376
  Cats authored 2 years ago
  
  ee0b1376
- Merge pull request #314 from biowdl/fix_arg_space · 44781d17
  Cats authored 2 years ago
  
  Fix arg space
  44781d17
- Update CHANGELOG.md · b79e59b1
  Giannis Moustakas authored 2 years ago
  
  b79e59b1
- Add space between flag and the value following · 6d032953
  Giannis Moustakas authored 2 years ago
  
  6d032953
Jan 26, 2023
- Merge remote-tracking branch 'origin/develop' into somaticSv · c85f016a
  Cats authored 2 years ago
  
  c85f016a
- add missing paramter_meta · 2b4fb7ea
  Cats authored 2 years ago
  
  2b4fb7ea
- Merge pull request #313 from biowdl/macs2_flags · 24f6a069
  Cats authored 2 years ago
  
  Add a number of macs2 flags so we can adhere to Encode
  24f6a069