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Commit eddcbfff authored by Cats's avatar Cats
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fix conda command SampleConfig

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1 merge request!20fix conda command SampleConfig
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...@@ -184,7 +184,7 @@ task SampleConfig { ...@@ -184,7 +184,7 @@ task SampleConfig {
String toolCommand = if defined(toolJar) String toolCommand = if defined(toolJar)
then "java -Xmx" + mem + "G -jar " +toolJar then "java -Xmx" + mem + "G -jar " +toolJar
else "biopet-extractadaptersfastqc -Xmx" + mem + "G" else "biopet-sampleconfig -Xmx" + mem + "G"
command { command {
set -e -o pipefail set -e -o pipefail
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