From eddcbfff33404abc8b381591fef609628a85074c Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 13 Jun 2018 09:47:41 +0200
Subject: [PATCH] fix conda command SampleConfig
---
biopet.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet.wdl b/biopet.wdl
index b3234e4..1055960 100644
--- a/biopet.wdl
+++ b/biopet.wdl
@@ -184,7 +184,7 @@ task SampleConfig {
String toolCommand = if defined(toolJar)
then "java -Xmx" + mem + "G -jar " +toolJar
- else "biopet-extractadaptersfastqc -Xmx" + mem + "G"
+ else "biopet-sampleconfig -Xmx" + mem + "G"
command {
set -e -o pipefail
--
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