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Commit dd18acf2 authored by Moustakas's avatar Moustakas
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Fix memory issues

parent cf05dea5
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1 merge request!67fix CaseControl and macs2 tasks
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biopet/sampleconfig.wdl
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...@@ -91,7 +91,7 @@ task CaseControl { ...@@ -91,7 +91,7 @@ task CaseControl {
String controlTag = "control" String controlTag = "control"
Int memory = 4 Int memory = 4
Float memoryMultiplier = 1.5 Float memoryMultiplier = 2.0
} }
String toolCommand = if defined(toolJar) String toolCommand = if defined(toolJar)
...@@ -102,7 +102,7 @@ task CaseControl { ...@@ -102,7 +102,7 @@ task CaseControl {
set -e -o pipefail set -e -o pipefail
~{preCommand} ~{preCommand}
mkdir -p $(dirname ~{outputPath}) mkdir -p $(dirname ~{outputPath})
~{toolCommand} CromwellArrays \ ~{toolCommand} CaseControl \
-i ~{sep="-i " inputFiles} \ -i ~{sep="-i " inputFiles} \
-s ~{sep="-s " sampleConfigs} \ -s ~{sep="-s " sampleConfigs} \
~{"-o " + outputPath} \ ~{"-o " + outputPath} \
......
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