From dd18acf289ce93cb23b4a7a264a41b015767a85e Mon Sep 17 00:00:00 2001
From: imoustakas <i.moustakas@lumc.nl>
Date: Thu, 27 Sep 2018 16:15:48 +0200
Subject: [PATCH] Fix memory issues
---
biopet/sampleconfig.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/biopet/sampleconfig.wdl b/biopet/sampleconfig.wdl
index 35ea11f..cafb77d 100644
--- a/biopet/sampleconfig.wdl
+++ b/biopet/sampleconfig.wdl
@@ -91,7 +91,7 @@ task CaseControl {
String controlTag = "control"
Int memory = 4
- Float memoryMultiplier = 1.5
+ Float memoryMultiplier = 2.0
}
String toolCommand = if defined(toolJar)
@@ -102,7 +102,7 @@ task CaseControl {
set -e -o pipefail
~{preCommand}
mkdir -p $(dirname ~{outputPath})
- ~{toolCommand} CromwellArrays \
+ ~{toolCommand} CaseControl \
-i ~{sep="-i " inputFiles} \
-s ~{sep="-s " sampleConfigs} \
~{"-o " + outputPath} \
--
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