@@ -11,6 +11,7 @@ that users understand how the changes affect the new version.
version 1.0.0-dev
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+ Mutect2: Add GATK tasks related to variant filtering (LearnReadOrientationModel, MergeStats, GetPileupSummaries, CalculateContamination and FilterMutectCalls)
+ Mutect2: Add "--germline-resource" and "--f1r2-tar-gz" inputs, requiring an update to GATK 4.1.2.0.
+ Mutect2: Add necessary missing index attribute for panel of normals
+ VarDict: Add user definable flags (-M, -A, -Q, -d, -v, -f) to the paired VCF filtering script.
