From d1522b256f52a98e942483f853f1f9574d2edb46 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ant=C3=B3nio=20Paulo?= <antonio.do.paulo@ist.utl.pt> Date: Sun, 4 Aug 2019 16:30:01 +0200 Subject: [PATCH] update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 4542187..e362034 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,6 +11,7 @@ that users understand how the changes affect the new version. version 1.0.0-dev --------------------------- ++ Mutect2: Add GATK tasks related to variant filtering (LearnReadOrientationModel, MergeStats, GetPileupSummaries, CalculateContamination and FilterMutectCalls) + Mutect2: Add "--germline-resource" and "--f1r2-tar-gz" inputs, requiring an update to GATK 4.1.2.0. + Mutect2: Add necessary missing index attribute for panel of normals + VarDict: Add user definable flags (-M, -A, -Q, -d, -v, -f) to the paired VCF filtering script. -- GitLab