outputPath: {description: "The location the output VCF file should be written.", category: "common"}
threads: {description: "The the number of threads required to run a program", category: "advanced"}
memory: {description: "The memory required to run the programs", category: "advanced"}
cleverMaxDelLength: {description: "Maximum deletion length to look for from clever predictions.", category: "advanced"}
maxLengthDiff: {description: "Maximum length difference between split-read and read-pair deletion to be considered identical ", category: "advanced"}
maxOffset: {description: "Maximum center distance between split-read and read-pair deletion to be considered identical", category: "advanced"}
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
}
}
...
...
@@ -96,7 +93,6 @@ task Prediction {
}
parameter_meta {
<<<<<<< HEAD
fiteredBam: {description: "The bam file where sequences less than 30bp were removed.", category: "advanced"}
indexedFiteredBam: {description: "The index of the filtered bam file.", category: "advanced"}
bwaIndex: {description: "The BWA index files.", category: "required"}
...
...
@@ -107,15 +103,6 @@ task Prediction {
maxLengthDiff: {description: "Maximum length difference between split-read and read-pair deletion to be considered identical ", category: "advanced"}
cleverMaxDelLength: {description: "Maximum deletion length to look for from clever predictions.", category: "advanced"}
memory: {description: "The memory required to run the programs", category: "advanced"}
=======
# inputs
bamFile: {description: "The bam file to process.", category: "required"}
bamIndex: {description: "The index bam file.", category: "required"}
bwaIndex: {description: "The BWA index files.", category: "required"}
outputPath: {description: "The location the output VCF file should be written.", category: "common"}
threads: {description: "The the number of threads required to run a program", category: "common"}
memory: {description: "The memory required to run the programs", category: "common"}
>>>>>>> 338f85339b62da7921f2d5d68d0870e81a80d542
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}