Skip to content
Snippets Groups Projects
Commit d05b8751 authored by cedrick's avatar cedrick
Browse files

fix merging conflict

parent 4bb4290c
No related branches found
No related tags found
No related merge requests found
......@@ -53,9 +53,6 @@ task Mateclever {
outputPath: {description: "The location the output VCF file should be written.", category: "common"}
threads: {description: "The the number of threads required to run a program", category: "advanced"}
memory: {description: "The memory required to run the programs", category: "advanced"}
cleverMaxDelLength: {description: "Maximum deletion length to look for from clever predictions.", category: "advanced"}
maxLengthDiff: {description: "Maximum length difference between split-read and read-pair deletion to be considered identical ", category: "advanced"}
maxOffset: {description: "Maximum center distance between split-read and read-pair deletion to be considered identical", category: "advanced"}
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
}
}
......@@ -96,7 +93,6 @@ task Prediction {
}
parameter_meta {
<<<<<<< HEAD
fiteredBam: {description: "The bam file where sequences less than 30bp were removed.", category: "advanced"}
indexedFiteredBam: {description: "The index of the filtered bam file.", category: "advanced"}
bwaIndex: {description: "The BWA index files.", category: "required"}
......@@ -107,15 +103,6 @@ task Prediction {
maxLengthDiff: {description: "Maximum length difference between split-read and read-pair deletion to be considered identical ", category: "advanced"}
cleverMaxDelLength: {description: "Maximum deletion length to look for from clever predictions.", category: "advanced"}
memory: {description: "The memory required to run the programs", category: "advanced"}
=======
# inputs
bamFile: {description: "The bam file to process.", category: "required"}
bamIndex: {description: "The index bam file.", category: "required"}
bwaIndex: {description: "The BWA index files.", category: "required"}
outputPath: {description: "The location the output VCF file should be written.", category: "common"}
threads: {description: "The the number of threads required to run a program", category: "common"}
memory: {description: "The memory required to run the programs", category: "common"}
>>>>>>> 338f85339b62da7921f2d5d68d0870e81a80d542
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
}
}
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment