diff --git a/clever.wdl b/clever.wdl index 4a0ba84b070334e631c95d6666b2104a7cb65e47..f7a7a3ebdf5936df4a5e3d1ff5ec6cce42aa5468 100644 --- a/clever.wdl +++ b/clever.wdl @@ -53,9 +53,6 @@ task Mateclever { outputPath: {description: "The location the output VCF file should be written.", category: "common"} threads: {description: "The the number of threads required to run a program", category: "advanced"} memory: {description: "The memory required to run the programs", category: "advanced"} - cleverMaxDelLength: {description: "Maximum deletion length to look for from clever predictions.", category: "advanced"} - maxLengthDiff: {description: "Maximum length difference between split-read and read-pair deletion to be considered identical ", category: "advanced"} - maxOffset: {description: "Maximum center distance between split-read and read-pair deletion to be considered identical", category: "advanced"} dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"} } } @@ -96,7 +93,6 @@ task Prediction { } parameter_meta { -<<<<<<< HEAD fiteredBam: {description: "The bam file where sequences less than 30bp were removed.", category: "advanced"} indexedFiteredBam: {description: "The index of the filtered bam file.", category: "advanced"} bwaIndex: {description: "The BWA index files.", category: "required"} @@ -107,15 +103,6 @@ task Prediction { maxLengthDiff: {description: "Maximum length difference between split-read and read-pair deletion to be considered identical ", category: "advanced"} cleverMaxDelLength: {description: "Maximum deletion length to look for from clever predictions.", category: "advanced"} memory: {description: "The memory required to run the programs", category: "advanced"} -======= - # inputs - bamFile: {description: "The bam file to process.", category: "required"} - bamIndex: {description: "The index bam file.", category: "required"} - bwaIndex: {description: "The BWA index files.", category: "required"} - outputPath: {description: "The location the output VCF file should be written.", category: "common"} - threads: {description: "The the number of threads required to run a program", category: "common"} - memory: {description: "The memory required to run the programs", category: "common"} ->>>>>>> 338f85339b62da7921f2d5d68d0870e81a80d542 dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"} } }