add outputs

caaba597 · Ruben Vorderman · 5db2a1f9 · caaba597
Commit caaba597 authored 4 years ago by Ruben Vorderman
--- a/sambamba.wdl
+++ b/sambamba.wdl
@@ -55,6 +55,11 @@ task Markdup {
        sambamba index ~{outputPath} ~{bamIndexPath} 
    }

+    output {
+        File outputBam = outputPath
+        File outputBamIndex = bamIndexPath
+    }
+
    runtime {
        memory: "~{memoryGb}G"
        cpu: threads