From caaba5971f6295d13ea33f728744fdb5f692d007 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Fri, 26 Jun 2020 10:50:10 +0200
Subject: [PATCH] add outputs
---
sambamba.wdl | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/sambamba.wdl b/sambamba.wdl
index b411429..b402f58 100644
--- a/sambamba.wdl
+++ b/sambamba.wdl
@@ -55,6 +55,11 @@ task Markdup {
sambamba index ~{outputPath} ~{bamIndexPath}
}
+ output {
+ File outputBam = outputPath
+ File outputBamIndex = bamIndexPath
+ }
+
runtime {
memory: "~{memoryGb}G"
cpu: threads
--
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