From bef15749a53fe13c91aa9a9f28344c0d0b08001d Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Tue, 7 Jul 2020 13:44:07 +0200
Subject: [PATCH] use samtools 1.10 and hisat 2.2.0
---
hisat2.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/hisat2.wdl b/hisat2.wdl
index 77c370f..c24610e 100644
--- a/hisat2.wdl
+++ b/hisat2.wdl
@@ -41,8 +41,8 @@ task Hisat2 {
Int timeMinutes = 1 + ceil(size([inputR1, inputR2], "G") * 180 / threads)
# quay.io/biocontainers/mulled-v2-a97e90b3b802d1da3d6958e0867610c718cb5eb1
# is a combination of hisat2 and samtools
- # hisat2=2.1.0, samtools=1.8
- String dockerImage = "quay.io/biocontainers/mulled-v2-a97e90b3b802d1da3d6958e0867610c718cb5eb1:2388ff67fc407dad75774291ca5038f40cac4be0-0"
+ # hisat2=2.2.0, samtools=1.10
+ String dockerImage = "quay.io/biocontainers/mulled-v2-a97e90b3b802d1da3d6958e0867610c718cb5eb1:2880dd9d8ad0a7b221d4eacda9a818e92983128d-0"
}
String bamIndexPath = sub(outputBam, "\.bam$", ".bai")
--
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