memory adjustments

biopet/biopet.wdl

@@ -84,7 +84,7 @@ task ExtractAdaptersFastqc {
         Float? adapterCutoff
         Boolean? outputAsFasta
 
-        Int memory = 4
+        Int memory = 8
         Float memoryMultiplier = 5 # This is ridiculous...
         String dockerTag = "0.2--1"
     }

cutadapt.wdl

@@ -62,7 +62,7 @@ task Cutadapt {
         String? reportPath
 
         Int cores = 1
-        Int memory = 8
+        Int memory = 16
         String dockerTag = "2.3--py36h14c3975_0"
     }
 

htseq.wdl

@@ -10,7 +10,7 @@ task HTSeqCount {
         String order = "pos"
         String stranded = "no"
 
-        Int memory = 20
+        Int memory = 40
         String dockerTag = "0.9.1--py36h7eb728f_2"
     }
 

picard.wdl

@@ -50,8 +50,8 @@ task CollectMultipleMetrics {
         Boolean collectSequencingArtifactMetrics = true
         Boolean collectQualityYieldMetrics = true
 
-        Int memory = 4
-        Float memoryMultiplier = 3.5
+        Int memory = 8
+        Float memoryMultiplier = 4
         String dockerTag = "8dde04faba6c9ac93fae7e846af3bafd2c331b3b-0"
     }
 
@@ -133,8 +133,8 @@ task CollectRnaSeqMetrics {
         String basename
         String strandSpecificity = "NONE"
 
-        Int memory = 4
-        Float memoryMultiplier = 3.0
+        Int memory = 8
+        Float memoryMultiplier = 4.0
         String dockerTag = "8dde04faba6c9ac93fae7e846af3bafd2c331b3b-0"
     }
 
@@ -278,7 +278,7 @@ task MarkDuplicates {
         String outputBamPath
         String metricsPath
 
-        Int memory = 4
+        Int memory = 8
         Float memoryMultiplier = 3.0
         String dockerTag = "2.18.26--0"