diff --git a/biopet/biopet.wdl b/biopet/biopet.wdl index 149d8bfdf33d75a2b1a86b7d2ab06294df7410ae..52180b8b1e7b4601188e51645da90a8ad96a181d 100644 --- a/biopet/biopet.wdl +++ b/biopet/biopet.wdl @@ -84,7 +84,7 @@ task ExtractAdaptersFastqc { Float? adapterCutoff Boolean? outputAsFasta - Int memory = 4 + Int memory = 8 Float memoryMultiplier = 5 # This is ridiculous... String dockerTag = "0.2--1" } diff --git a/cutadapt.wdl b/cutadapt.wdl index 9b3f4a91f0f68d8b0b8974097f20093e26a54d3c..cf9095bd2fe3a1df35f83fc27ad8cef8b5e6e664 100644 --- a/cutadapt.wdl +++ b/cutadapt.wdl @@ -62,7 +62,7 @@ task Cutadapt { String? reportPath Int cores = 1 - Int memory = 8 + Int memory = 16 String dockerTag = "2.3--py36h14c3975_0" } diff --git a/htseq.wdl b/htseq.wdl index 3011c36146a6db7d577c9cd757dd2bfb2441e734..b08470934ade2cca91c081a28ffc49b033fd73c4 100644 --- a/htseq.wdl +++ b/htseq.wdl @@ -10,7 +10,7 @@ task HTSeqCount { String order = "pos" String stranded = "no" - Int memory = 20 + Int memory = 40 String dockerTag = "0.9.1--py36h7eb728f_2" } diff --git a/picard.wdl b/picard.wdl index 2628ca8125e78087b4fc57e98118e15a9cde47a0..9f42acbd781f47e5cc08a364f15e613bfd9e962a 100644 --- a/picard.wdl +++ b/picard.wdl @@ -50,8 +50,8 @@ task CollectMultipleMetrics { Boolean collectSequencingArtifactMetrics = true Boolean collectQualityYieldMetrics = true - Int memory = 4 - Float memoryMultiplier = 3.5 + Int memory = 8 + Float memoryMultiplier = 4 String dockerTag = "8dde04faba6c9ac93fae7e846af3bafd2c331b3b-0" } @@ -133,8 +133,8 @@ task CollectRnaSeqMetrics { String basename String strandSpecificity = "NONE" - Int memory = 4 - Float memoryMultiplier = 3.0 + Int memory = 8 + Float memoryMultiplier = 4.0 String dockerTag = "8dde04faba6c9ac93fae7e846af3bafd2c331b3b-0" } @@ -278,7 +278,7 @@ task MarkDuplicates { String outputBamPath String metricsPath - Int memory = 4 + Int memory = 8 Float memoryMultiplier = 3.0 String dockerTag = "2.18.26--0"