create output directory

9e34b90b · Ruben Vorderman · 2bc6ec69 · 9e34b90b
Commit 9e34b90b authored 7 years ago by Ruben Vorderman
--- a/seqtk.wdl
+++ b/seqtk.wdl
@@ -10,6 +10,7 @@ task sample {

    command {
    set -e -o pipefail
+    ${'mkdir -p $(dirname ' + outFilePath + ')'}
    ${preCommand}
    seqtk sample \
    ${"-s " + seed} \