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Created with Raphaël 2.2.09Aug863231Jul30272625242319181716131153228Jun2120191814131211876530May29282422211714119874326Apr25181713121110654329Mar2120191615141312986126Feb22219831Jan3029191817Merge branch 'develop' into somaticRemove samplesheet.wdlRemove samplesheet.wdladd SortVcf taskvarious fixesadd mantaremove unused inputfix somatic tasks and add supporting tasksMerge pull request #40 from biowdl/various_new_tasksadd varDictMerge remote-tracking branch 'origin/develop' into developadd READMEremove runDir outputadd Somatic strelka taskMerge branch 'develop' into various_new_tasksMerge pull request #42 from biowdl/typotypoMerge branch 'develop' into various_new_tasksMerge pull request #41 from biowdl/R2_MD5_fixfix type of R2_md5 (String to String?)Merge branch 'develop' into various_new_tasksadd vcfStats and Mutect2Merge pull request #39 from biowdl/macs2Merge branch 'develop' into macs2Merge pull request #37 from biowdl/BIOWDL-19Add config and indexMerge branch 'develop' into BIOWDL-19Merge pull request #36 from biowdl/reduceComplexityMerge branch 'develop' into BIOWDL-19add linkadd commentsadd samplesheetnomodel is mandaotry and defautls to falseFix macs2turn optional with default into mandatory with defaultMerge branch 'develop' into reduceComplexityreduce task complexitiesMerge pull request #35 from biowdl/fix_validateFastqstyleMerge branch 'develop' into fix_validateFastq